Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20latipinna_20[refseq_20GCF_5F001443285.1_202015-11-13] 17,988 sequences; 815,144,743 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2100 122 8e-23 seq722 105 6e-18 >seq2100 Length=111253 Score = 122 bits (134), Expect = 8e-23 Identities = 146/196 (74%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 || ||||| ||||| ||||| || |||||||| | || || ||||||||||| || || Sbjct 23196 TCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAG 23255 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 ||||| | ||| ||||| | ||| | || |||||| ||| |||||| ||| ||| Sbjct 23256 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCCTT----GAC 23311 Query 41792 G-ACACA---GTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTT 41847 | | || |||||||| | |||||||||| || || ||||| || || || ||||| Sbjct 23312 GTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCAGTGAGGGTCTT 23371 Query 41848 TACGAAAATCTGCATG 41863 ||||| ||||||||| Sbjct 23372 GACGAAGATCTGCATG 23387 Score = 116 bits (128), Expect = 3e-21 Identities = 162/225 (72%), Gaps = 8/225 (4%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || || || || ||| || || || || || ||||| || |||||||| Sbjct 23625 AGACGGAGAACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGG 23684 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| || || || ||||| | ||| ||||| | ||| | || |||| Sbjct 23685 CCATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCC 23744 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGA-CACA---GTGTCGCTCGACTCCACCTCCAC 41820 || ||| |||||| ||| |||| | || |||||||| | ||||||||||| Sbjct 23745 TTATCCTGGATTTTGGCCTT----GACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAG 23800 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || ||||| || || || ||||| || || ||||||||||| Sbjct 23801 GGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCATGTT 23845 >seq722 Length=280156 Score = 105 bits (116), Expect = 6e-18 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| || || ||| ||||||||| || || ||||| || |||||||| Sbjct 192171 AGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGACAGGGTGCGG 192112 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| || || || || || || | ||| ||||| | |||| || || Sbjct 192111 CCATCTTCCAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGGAATGCCTTCT 192052 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGT 41823 || ||| ||| | ||||| | ||| || | | || || | ||||||||||| || Sbjct 192051 TTATCC-TGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGT 191993 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || || || || || |||||||||||||| || Sbjct 191992 GATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTT 191951 Score = 105 bits (116), Expect = 6e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 |||||| || || ||| ||||||||| ||||| ||||| || |||||||| | || || Sbjct 192391 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTTTAGTCCGACAGGGTGCGGCCATCTTC 192332 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 ||||| || || || || || || | ||| ||||| | |||| | || || ||| | Sbjct 192331 CAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGGAATGTCTTCTTTATCC-T 192273 Query 41773 GATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 || | ||||| | ||| || | | || || | ||||||||||| || || || | Sbjct 192272 GAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATAGTCT 192213 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || || || || || ||||||||||||||| Sbjct 192212 TCCCAGTGAGGGTTTTCACGAAAATCTGCATG 192181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462200050945600