Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13]
18,105 sequences; 801,711,499 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq406 419 3e-112
seq541 111 2e-19
>seq406
Length=364117
Score = 419 bits (464), Expect = 3e-112
Identities = 1288/1978 (65%), Gaps = 29/1978 (1%)
Strand=Plus/Minus
Query 53056 CTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 53115
|||||| ||||| | | | || | | | ||||| ||||| || ||||| | |
Sbjct 267979 CTGAATGGATCCGTTGTTTGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCACG 267920
Query 53116 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 53175
||| || | | | ||||| || || || || | || || ||||| |||| || ||
Sbjct 267919 CTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCT 267860
Query 53176 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 53235
|| ||||| || || ||||| |||| || | ||||| || || |||| || || ||
Sbjct 267859 GCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 267800
Query 53236 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 53295
|| || || || ||||| || |||| || | || || || | |||| | | |||
Sbjct 267799 GGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGAT 267740
Query 53296 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 53355
|| || || || | | ||| | ||| || || | ||||
Sbjct 267739 CTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTCGGTGTCTTCTCCCACATGTCGTA 267680
Query 53356 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 53415
|| || || || || ||| | ||| || | || || ||||| || || || |
Sbjct 267679 CTGGAGGATGCCCTTGCTGATGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGC 267620
Query 53416 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 53475
|| ||||| || || ||||| | || ||| || ||||| |||||||||| | ||
Sbjct 267619 GGCGAGTTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTT 267560
Query 53476 TAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAA 53535
|| || ||||| |||| || || |||| | || || || || || || |
Sbjct 267559 GAGCAGCTGGGCTTCGGGGCTTTCGAACGGATGTCGCATCAGGATGAAGGCATCGGCCAG 267500
Query 53536 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 53595
|| || || || || ||||| || || || | ||| || || | || ||||| || |
Sbjct 267499 ACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGACGTCTCGGCTTCGGGGAC 267440
Query 53596 AGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATC 53655
|| || ||||| || || || || || ||||||||| | || ||||| ||| ||
Sbjct 267439 CGGGTAGTAATTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGA 267380
Query 53656 CTTCAGTTTGAGAAAATCAAATTGTCCA-TCTA---TTACAAACATGTTCAATGCAATAG 53711
||| || || || || |||| ||| | || ||||||| | || || |
Sbjct 267379 GGCCAGCTTCTTGAAGTCGAAA-GTCCGCTCTGGCGTGACGTACATGTTGAGGGCGATGG 267321
Query 53712 ATGCCAGATTACAAACGGCTACCTCATTAGCATCC--GCATATTGTATTATCTCAGTGCA 53769
| ||||| || || ||||| ||||| | | | | | || | | | ||| |||||
Sbjct 267320 AGGCCAGGTTGCAGACGGCCACCTCGTC--CTTGCTGGTGTACTCCACCACCTCTGTGCA 267263
Query 53770 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 53829
|| || || || |||||||| || | || || || || ||||| |||| || || ||
Sbjct 267262 GAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTC 267203
Query 53830 CTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGAC 53889
||| || || ||| | ||||| || ||||| ||||||| || || || || | |||||
Sbjct 267202 CTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAG 267143
Query 53890 GACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATA--GTGTATACAAT 53947
| ||||| | | || ||| ||| | || ||| ||||| | |
Sbjct 267142 CTGCTGCGCCTTCACCACCCTCTTCACCCTCCCTTCCTTCTCATATCTGGTGTAGAGCTT 267083
Query 53948 CGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAAC 54007
| || ||||| |||||||| | ||||| |||||||| || |||||||||||
Sbjct 267082 C--TCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACACTCGCTGGGACACATCAAG 267025
Query 54008 GACCACTCTCCGTCATCCTT--CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-T 54064
||||| || || | ||| ||||| ||||| || || || || ||||| | || |
Sbjct 267024 GACCAGTCCTGGT--TGCTTTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGCGT 266967
Query 54065 ATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 54124
| ||| || ||||||| ||| || ||||| |||||||| ||||| || || || |||||
Sbjct 266966 AGAAA-AGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAG 266908
Query 54125 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTT 54184
| | | || | ||||||||||||| ||| |||| | | || || | |||||
Sbjct 266907 TCGAACACGTCGAAGTGCCACGGTTCCAGGTACATGGCAAAGGCCCCGGGTCTCTTGTTG 266848
Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244
|| ||||| || | ||| | ||| ||||| || |||||||||| ||| || | | ||
Sbjct 266847 CCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCG 266788
Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304
||||| || ||||| |||| || |||||||| | | || || || | |
Sbjct 266787 TTGGAGTTGCCGTTGGTGCCGGCAATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCC 266728
Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364
| || |||||||| || || || || | ||||| | || | || || ||||||
Sbjct 266727 ACGCCGATCCCCCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATG 266668
Query 54365 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 54424
|| || || || || ||| ||||| ||| || || ||||| |||| || | || |
Sbjct 266667 CCTTCGATGCTGTCGTCCTTCATGGCAAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTG 266608
Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484
|| || || || || | ||| ||||| ||||| || ||||| || || || || || |||
Sbjct 266607 GTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTG 266548
Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544
|| |||||||| || | ||| || || | || || || || | || | ||| | |
Sbjct 266547 TAGGTCTCGATGGCAGCGTCAATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGC 266488
Query 54545 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAA 54604
|||||||| || | || | | || ||| || ||||||| |||||| |||| |
Sbjct 266487 ATGTGCTGCGGCCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCCAGA 266428
Query 54605 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGT 54664
|| || ||||| || ||||||| || || |||| |||||||| || || |||||
Sbjct 266427 GTCTTGAAACCGAAGAAGTTGTAGGAGAAATCTCTGTCGTAAATGATGGAGGAATTGAGG 266368
Query 54665 TTATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATCGGAGAAT---G 54720
||||| | || | || | || | || | ||| || || || ||||| | |
Sbjct 266367 CGGTCCTTGTTTTCCATGACGATGTCGAGCGT-CTCCTTGGAGATCATGGGAGAGTGGCG 266309
Query 54721 TTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCACTAAATAGttt 54780
||| || ||| ||||| ||| || | || | |||||| || || || | ||
Sbjct 266308 TTT---GTTCAGAGGGTTGACGTAGGCGAACAGGTCTTCCATCACCTCGCTGAACACCTT 266252
Query 54781 ttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGG 54840
|| || || ||||| || || || ||||| || || ||||| || ||||| || || ||
Sbjct 266251 CTTGGTCTCCTTGTGCAGGTTGGAGACGGCAATCCTCGCGGCCAGGATGGCGTAGTCGGG 266192
Query 54841 ATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGT 54900
|||| || || ||||| || || || || | || ||||| | || || || ||
Sbjct 266191 GTGTTTGGTCGTCAGGGTGGCCGCGATCTCCGCCGCTAGCGTGTCAAGCTCCACGGTGGT 266132
Query 54901 TACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATC 54960
|| || | || | || ||||| |||||||| | || | | ||||| | | ||
Sbjct 266131 GACGCCGCTGTACAAGCCCTGGATCACCTTCATGGTGATCTGAGCTGGATCCACAAAGTC 266072
Query 54961 AGTGTTTAAGCCATAACATAATTTTCT-AATACGAGATGTGATTTTATCAAACATGAC 55017
| ||| | ||| || || || |||| || || || ||||||||||| ||||||||
Sbjct 266071 CGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGCGGGAGGTGATTTTATCGAACATGAC 266015
Score = 93.3 bits (102), Expect = 5e-14
Identities = 122/169 (72%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934
|||| ||||| || ||||| || || ||||| || |||| || || || ||||| |
Sbjct 268242 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTCGGCTCAGCGATGTGGATGT 268183
Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994
||| || || || || |||||||||||||| | |||||| ||||| | | | ||||
Sbjct 268182 TCAGCGACTGGCTCTGGTCGATGAAGGCTCCACGGTCTGCCGCCATCCTCAGCACGGTCT 268123
Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 53043
| || | |||||||||| |||||||| | |||| | || |||||
Sbjct 268122 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGGTCCTCTGG 268074
>seq541
Length=321934
Score = 111 bits (122), Expect = 2e-19
Identities = 126/169 (75%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934
||||||||||||| ||||| || || |||||| || | || || || || || || |
Sbjct 158005 TCCATCCGTAAAAGTGCATGCTGGTGAGTTTGCCGTAGTTTGGCTCAGCGATGTGAATGT 158064
Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994
||| ||||||||| ||||||||| ||| || | ||||| ||||| || | || || |
Sbjct 158065 TCAGAGATTGACTCTGATCGATGTAGGTGCCACGATCTGCTGCCATCTTCAGGACGGTTT 158124
Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 53043
| || | |||||||||| |||||||| | |||| | |||||||||
Sbjct 158125 TCTGGGAGATTTCCCAAACTGTTTTATAGAGCTGCTTCAGATCTTCTGG 158173
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593587233380400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |