Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq406 167 2e-36 seq1594 120 3e-22 seq619 113 4e-20 >seq406 Length=364117 Score = 167 bits (184), Expect = 2e-36 Identities = 464/706 (66%), Gaps = 22/706 (3%) Strand=Plus/Minus Query 133275 GTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATG 133334 ||| ||| |||| || ||||||||||| || ||||| || || | ||||||||||||| Sbjct 267840 GTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATG 267781 Query 133335 TACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTC 133394 ||||| || || ||| || ||||||| ||| || || || || ||| Sbjct 267780 GGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTC 267721 Query 133395 CAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGC 133454 ||||||||||| | | | || | || || || | ||| | || Sbjct 267720 CAGTCCCACAGGTCGGT--------------CGGTGTCTTC-TCCCACATGTCGTACTGG 267676 Query 133455 AAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCC 133514 | || ||| |||| | || | || ||||| || ||||| ||| | ||| Sbjct 267675 AGGATGCCCTTGCTGATGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCG 267616 Query 133515 AGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGAT-TGAATAGTTGAC 133573 || |||||||| ||||||| ||||| ||| ||||| || ||| || || ||||| Sbjct 267615 AGTTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGAT-GTTGAG 267557 Query 133574 GAACCTGGCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGGCCAAAC 133632 | | ||| ||| ||| ||| | | ||||||| | || | || || ||||||| || Sbjct 267556 CAGCTGGGCTTCGGGGCTTTCGAACG-GATGTCGCATCAGGATGAAGGCATCGGCCAGAC 267498 Query 133633 CCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGG 133692 |||| | ||||| ||||| || | || || ||| | |||| | |||| | Sbjct 267497 CCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGACGTCTCGGCTTCGGGGACCG 267438 Query 133693 GATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAATGTT 133752 | |||| |||| |||||||||||||||||| || ||||| | || || | Sbjct 267437 GGTAGTAATTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGG 267378 Query 133753 TCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGCAATAC 133812 |||| |||| || ||| || | ||| |||| || |||||| ||| || Sbjct 267377 CCAGCTTCTTGAAGTCGAAAGTCC--GCTCTGGCGT-GACGTACATGTTGAGGGCGATGG 267321 Query 133813 TGGCTAGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCTCGGCGCAGA 133872 ||| || || || |||||| ||||| || | | |||| || | ||| | ||||| Sbjct 267320 AGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCTGTGCAGA 267261 Query 133873 GGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGATCCT 133932 |||||||||||||||||||||||| || | || ||||| | |||||| |||| Sbjct 267260 GGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCT 267201 Query 133933 TGTATAGCATGTACGGCCCGCCGGTTTCGACGTTGGTCTCGACGAT 133978 |||| |||||||| ||| ||||||||| | || ||||| ||| Sbjct 267200 TGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGAT 267155 >seq1594 Length=294527 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| ||| || ||||| || |||||||| || || ||||| ||| || Sbjct 188242 ACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 188301 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| || |||| || | |||||| || || || ||||||||||| || Sbjct 188302 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 188361 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||||| | || | |||||| || ||| ||||| | ||| | |||||| Sbjct 188362 ATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTG 188421 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || ||||| ||||| |||||||| Sbjct 188422 CCGGTGAGGGTTTTCACAAAGATCTGCAT 188450 Score = 113 bits (124), Expect = 4e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| ||||| ||||| || |||||||||||| || |||||| |||||| ||||| Sbjct 183827 GTGGAGGGTAGATTCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCCTCCAGCTG 183886 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || || |||| || | |||||| || || || ||||||||||| || ||||| Sbjct 183887 CTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTT 183946 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | |||||| || ||| || || | ||| | || |||||||| Sbjct 183947 GGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCGGT 184006 Query 118715 CAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || ||||||||| Sbjct 184007 GAGGGTCTTGACGAAGATCTGCATG 184031 Score = 107 bits (118), Expect = 2e-18 Identities = 150/209 (72%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || |||||||| || ||||| || || ||||| ||| || | Sbjct 184279 CAAGATGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCCA 184338 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| ||||| || |||| || | |||||| || || || ||||||||||| || | Sbjct 184339 GCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGA 184398 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 |||| ||| || | || | |||||| || || ||||| | ||| | ||||||| Sbjct 184399 TTTTGGCTTTGACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTGC 184458 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| || || || ||||| ||||||||| Sbjct 184459 CGGTGAGGGTCTTGACAAAGATCTGCATG 184487 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| || | ||||| ||| || ||||| Sbjct 188019 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTG 188078 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||||| || |||| || | |||||| || || || ||||||||||| || ||||| Sbjct 188079 CTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTT 188138 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | |||||| || ||| ||||| | ||| | ||||||||||| Sbjct 188139 GGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTTTTGCCGGT 188198 Query 118715 CAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || ||||||||| Sbjct 188199 GAGGGTCTTGACGAAGATCTGCATG 188223 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| || || ||||| ||| || Sbjct 184050 ACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 184109 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| || | |||||| || || || ||||||||||| || Sbjct 184110 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 184169 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| || ||| ||||| | ||| | || ||| Sbjct 184170 ATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTG 184229 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| || || || || || ||||||||| Sbjct 184230 CCGGTGAGGGTCTTGACGAAGATCTGCATG 184259 >seq619 Length=304156 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||||| || || |||||||| || || ||||| ||| || Sbjct 191799 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTC 191740 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| ||||| |||| || | |||||| || ||||| ||||| || || || Sbjct 191739 CAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTG 191680 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| ||| || || | || | |||||| || ||| ||||| | ||| | || || Sbjct 191679 AATCTTTGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTCTT 191620 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || |||||||| || ||||||||||| Sbjct 191619 CCCAGTGAGAGTTTTCACGAAAATCTGCAT 191590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433734673288660