Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13]
18,105 sequences; 801,711,499 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq406 167 2e-36
seq1594 120 3e-22
seq619 113 4e-20
>seq406
Length=364117
Score = 167 bits (184), Expect = 2e-36
Identities = 464/706 (66%), Gaps = 22/706 (3%)
Strand=Plus/Minus
Query 133275 GTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATG 133334
||| ||| |||| || ||||||||||| || ||||| || || | |||||||||||||
Sbjct 267840 GTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATG 267781
Query 133335 TACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTC 133394
||||| || || ||| || ||||||| ||| || || || || |||
Sbjct 267780 GGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTC 267721
Query 133395 CAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGC 133454
||||||||||| | | | || | || || || | ||| | ||
Sbjct 267720 CAGTCCCACAGGTCGGT--------------CGGTGTCTTC-TCCCACATGTCGTACTGG 267676
Query 133455 AAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCC 133514
| || ||| |||| | || | || ||||| || ||||| ||| | |||
Sbjct 267675 AGGATGCCCTTGCTGATGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCG 267616
Query 133515 AGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGAT-TGAATAGTTGAC 133573
|| |||||||| ||||||| ||||| ||| ||||| || ||| || || |||||
Sbjct 267615 AGTTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGAT-GTTGAG 267557
Query 133574 GAACCTGGCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGGCCAAAC 133632
| | ||| ||| ||| ||| | | ||||||| | || | || || ||||||| ||
Sbjct 267556 CAGCTGGGCTTCGGGGCTTTCGAACG-GATGTCGCATCAGGATGAAGGCATCGGCCAGAC 267498
Query 133633 CCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGG 133692
|||| | ||||| ||||| || | || || ||| | |||| | |||| |
Sbjct 267497 CCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGACGTCTCGGCTTCGGGGACCG 267438
Query 133693 GATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAATGTT 133752
| |||| |||| |||||||||||||||||| || ||||| | || || |
Sbjct 267437 GGTAGTAATTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGG 267378
Query 133753 TCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGCAATAC 133812
|||| |||| || ||| || | ||| |||| || |||||| ||| ||
Sbjct 267377 CCAGCTTCTTGAAGTCGAAAGTCC--GCTCTGGCGT-GACGTACATGTTGAGGGCGATGG 267321
Query 133813 TGGCTAGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCTCGGCGCAGA 133872
||| || || || |||||| ||||| || | | |||| || | ||| | |||||
Sbjct 267320 AGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCTGTGCAGA 267261
Query 133873 GGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGATCCT 133932
|||||||||||||||||||||||| || | || ||||| | |||||| ||||
Sbjct 267260 GGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCT 267201
Query 133933 TGTATAGCATGTACGGCCCGCCGGTTTCGACGTTGGTCTCGACGAT 133978
|||| |||||||| ||| ||||||||| | || ||||| |||
Sbjct 267200 TGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGAT 267155
>seq1594
Length=294527
Score = 120 bits (132), Expect = 3e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||||| ||| || ||||| || |||||||| || || ||||| ||| ||
Sbjct 188242 ACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 188301
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| ||||| || |||| || | |||||| || || || ||||||||||| ||
Sbjct 188302 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 188361
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || ||||| | || | |||||| || ||| ||||| | ||| | ||||||
Sbjct 188362 ATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTG 188421
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| || ||||| ||||| ||||||||
Sbjct 188422 CCGGTGAGGGTTTTCACAAAGATCTGCAT 188450
Score = 113 bits (124), Expect = 4e-20
Identities = 148/205 (72%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594
||||| ||||| ||||| || |||||||||||| || |||||| |||||| |||||
Sbjct 183827 GTGGAGGGTAGATTCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCCTCCAGCTG 183886
Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654
|| || || |||| || | |||||| || || || ||||||||||| || |||||
Sbjct 183887 CTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTT 183946
Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
|| || | || | |||||| || ||| || || | ||| | || ||||||||
Sbjct 183947 GGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCGGT 184006
Query 118715 CAGAGTTTTTACAAAAATCTGCATG 118739
|| || || || || |||||||||
Sbjct 184007 GAGGGTCTTGACGAAGATCTGCATG 184031
Score = 107 bits (118), Expect = 2e-18
Identities = 150/209 (72%), Gaps = 1/209 (0%)
Strand=Plus/Plus
Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590
|||| |||| || || |||||||| || ||||| || || ||||| ||| || |
Sbjct 184279 CAAGATGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCCA 184338
Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650
|||| ||||| || |||| || | |||||| || || || ||||||||||| || |
Sbjct 184339 GCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGA 184398
Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710
|||| ||| || | || | |||||| || || ||||| | ||| | |||||||
Sbjct 184399 TTTTGGCTTTGACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTGC 184458
Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATG 118739
|||| || || || ||||| |||||||||
Sbjct 184459 CGGTGAGGGTCTTGACAAAGATCTGCATG 184487
Score = 100 bits (110), Expect = 2e-16
Identities = 145/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594
||||| || ||||| || || |||||||| || | ||||| ||| || |||||
Sbjct 188019 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTG 188078
Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654
||||| || |||| || | |||||| || || || ||||||||||| || |||||
Sbjct 188079 CTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTT 188138
Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
|| || | || | |||||| || ||| ||||| | ||| | |||||||||||
Sbjct 188139 GGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTTTTGCCGGT 188198
Query 118715 CAGAGTTTTTACAAAAATCTGCATG 118739
|| || || || || |||||||||
Sbjct 188199 GAGGGTCTTGACGAAGATCTGCATG 188223
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||| | || ||||| || || |||||||| || || ||||| ||| ||
Sbjct 184050 ACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 184109
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || ||||| |||| || | |||||| || || || ||||||||||| ||
Sbjct 184110 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 184169
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | || | |||||| || ||| ||||| | ||| | || |||
Sbjct 184170 ATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTG 184229
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
||||| || || || || || |||||||||
Sbjct 184230 CCGGTGAGGGTCTTGACGAAGATCTGCATG 184259
>seq619
Length=304156
Score = 113 bits (124), Expect = 4e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| ||||| || ||||| || || |||||||| || || ||||| ||| ||
Sbjct 191799 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTC 191740
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|||||||| ||||| |||| || | |||||| || ||||| ||||| || || ||
Sbjct 191739 CAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTG 191680
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
||| ||| || || | || | |||||| || ||| ||||| | ||| | || ||
Sbjct 191679 AATCTTTGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTCTT 191620
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || |||||||| || |||||||||||
Sbjct 191619 CCCAGTGAGAGTTTTCACGAAAATCTGCAT 191590
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433734673288660
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