Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13]
18,105 sequences; 801,711,499 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq1594 132 6e-26
seq248 107 2e-18
seq692 104 3e-17
seq547 102 9e-17
seq2560 100 3e-16
seq4019 98.7 1e-15
seq3750 86.0 7e-12
>seq1594
Length=294527
Score = 132 bits (146), Expect = 6e-26
Identities = 148/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
|| ||||| |||||||| |||| ||| || || | || || |||||||| || || ||
Sbjct 184296 TCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAG 184355
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112
|| || | ||||||||| | || | || |||||| ||| |||||| ||||| ||
Sbjct 184356 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCTTTGACGTTC 184415
Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172
| | |||||||| | |||||| || | |||||||||||||| || || ||||| |||
Sbjct 184416 TCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACA 184475
Query 43173 AAGATTTGCATTTTTACG 43190
||||| ||||| ||| ||
Sbjct 184476 AAGATCTGCATGTTTGCG 184493
Score = 98.7 bits (108), Expect = 1e-15
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| |||| || || || | || || |||||||| || || ||
Sbjct 188031 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAA 188090
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| || | ||||||||| | || | || |||||| ||| |||||| |||| |
Sbjct 188091 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTT 188150
Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | | ||||| || | || || || | |||||||||||||| || || ||||| ||
Sbjct 188151 CTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGAC 188210
Query 43172 AAAGATTTGCAT 43183
||||| |||||
Sbjct 188211 GAAGATCTGCAT 188222
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| || || | ||| | |||| || | |||| || || || || ||||| |||| |
Sbjct 188224 CCACCCCTGAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGAC 188283
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
|| || || | || || |||||||| || || || || || | ||||||||| | ||
Sbjct 188284 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 188343
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136
| || |||||| ||| ||| || || | || | | ||||| || | |||||
Sbjct 188344 ATGCCCTCCTTATCCTGGATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCCACC 188403
Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186
|| | |||||||||||||| || || || || |||||||| ||||| ||
Sbjct 188404 TCAAGGGTGATGGTTTTGCCGGTGAGGGTTTTCACAAAGATCTGCATCTT 188453
>seq248
Length=436962
Score = 107 bits (118), Expect = 2e-18
Identities = 70/77 (91%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120
||||||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 296153 ATTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 296212
Query 60121 CACTATACTACCGAGGA 60137
|||||||||| ||||||
Sbjct 296213 CACTATACTAACGAGGA 296229
>seq692
Length=338404
Score = 104 bits (114), Expect = 3e-17
Identities = 78/92 (85%), Gaps = 5/92 (5%)
Strand=Plus/Minus
Query 60051 TTTATGAAAAAT-----TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACA 60105
|||| ||||||| || |||| || | ||||||||||||| ||||||||||||||||
Sbjct 324998 TTTAAGAAAAATAAATGTTACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACA 324939
Query 60106 GGCGGACATACTCACCACTATACTACCGAGGA 60137
||||| |||||||||||||||||| ||||||
Sbjct 324938 GGCGGGGATACTCACCACTATACTAACGAGGA 324907
>seq547
Length=667685
Score = 102 bits (112), Expect = 9e-17
Identities = 68/76 (89%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 272575 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 272634
Query 60126 TACTACCGAGGATTGA 60141
||||| |||||| |||
Sbjct 272635 TACTAACGAGGAGTGA 272650
Score = 100 bits (110), Expect = 3e-16
Identities = 67/75 (89%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 381656 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 381715
Query 60126 TACTACCGAGGATTG 60140
||||| |||||| ||
Sbjct 381716 TACTAACGAGGAATG 381730
Score = 95.1 bits (104), Expect = 1e-14
Identities = 74/88 (84%), Gaps = 3/88 (3%)
Strand=Plus/Plus
Query 60053 TATGAAAAATTTT---CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCG 60109
||||||||| || |||| || | |||||||||| || |||||||| |||||||||||
Sbjct 431792 TATGAAAAAGTTGTGCCTCCCCGTCGGGGAATCGAATCCCGGTCTCCCACGTGACAGGCG 431851
Query 60110 GACATACTCACCACTATACTACCGAGGA 60137
| |||||||||||||||||| ||||||
Sbjct 431852 GGGATACTCACCACTATACTAACGAGGA 431879
>seq2560
Length=140597
Score = 100 bits (110), Expect = 3e-16
Identities = 67/75 (89%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122
|| |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 97922 TTACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 97863
Query 60123 CTATACTACCGAGGA 60137
|||||||| ||||||
Sbjct 97862 CTATACTAACGAGGA 97848
Score = 98.7 bits (108), Expect = 1e-15
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120
|| |||||| || | |||||| |||||| ||||||||||||||||||||| ||||||||
Sbjct 80759 ATATTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 80700
Query 60121 CACTATACTACCGAGGA 60137
|||||||||| ||||||
Sbjct 80699 CACTATACTAACGAGGA 80683
Score = 98.7 bits (108), Expect = 1e-15
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120
|| |||||| || | |||||| |||||| ||||||||||||||||||||| ||||||||
Sbjct 95160 ATATTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 95219
Query 60121 CACTATACTACCGAGGA 60137
|||||||||| ||||||
Sbjct 95220 CACTATACTAACGAGGA 95236
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 97285 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 97226
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 97225 TACTAACGAGGA 97214
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||||||||||||||||||| |||||||||||||
Sbjct 73260 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 73201
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 73200 TACTAACGAGGA 73189
Score = 95.1 bits (104), Expect = 1e-14
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120
|| |||||| || | |||||| |||||| ||||||||||||||||| ||| ||||||||
Sbjct 81252 ATATTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGACGGGGATACTCAC 81193
Query 60121 CACTATACTACCGAGGA 60137
|||||||||| ||||||
Sbjct 81192 CACTATACTAACGAGGA 81176
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||||||||||||||||||| |||||||||||||
Sbjct 83621 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 83562
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 83561 TACTAACGAGGA 83550
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||||||||||||||||||| |||||||||||||
Sbjct 95589 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 95648
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 95649 TACTAACGAGGA 95660
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||||||||||||||||||| |||||||||||||
Sbjct 96550 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 96491
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 96490 TACTAACGAGGA 96479
Score = 93.3 bits (102), Expect = 5e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123
|||||| || | |||||| |||||| ||||||||||||||||||||| |||||||||||
Sbjct 86011 TTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 86070
Query 60124 TATACTACCGAGGA 60137
|||||| ||||||
Sbjct 86071 CATACTAACGAGGA 86084
>seq4019
Length=31626
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 8579 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 8520
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 8519 TACTAACGAGGA 8508
>seq3750
Length=46836
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||| ||||| |||||||| |||||||||||| ||||| |||||||
Sbjct 166 CTCCCCGTCGGGGAATCTAACCCCGGTCTCCCACGTGACAGGCGGGGATACTGACCACTA 225
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 226 TACTAACGAGGA 237
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571688190529400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |