Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1594 132 6e-26 seq248 107 2e-18 seq692 104 3e-17 seq547 102 9e-17 seq2560 100 3e-16 seq4019 98.7 1e-15 seq3750 86.0 7e-12 >seq1594 Length=294527 Score = 132 bits (146), Expect = 6e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || ||||| |||||||| |||| ||| || || | || || |||||||| || || || Sbjct 184296 TCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAG 184355 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || | ||||||||| | || | || |||||| ||| |||||| ||||| || Sbjct 184356 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCTTTGACGTTC 184415 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||||| | |||||| || | |||||||||||||| || || ||||| ||| Sbjct 184416 TCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACA 184475 Query 43173 AAGATTTGCATTTTTACG 43190 ||||| ||||| ||| || Sbjct 184476 AAGATCTGCATGTTTGCG 184493 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| |||| || || || | || || |||||||| || || || Sbjct 188031 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAA 188090 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || | ||||||||| | || | || |||||| ||| |||||| |||| | Sbjct 188091 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTT 188150 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||| || | || || || | |||||||||||||| || || ||||| || Sbjct 188151 CTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGAC 188210 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 188211 GAAGATCTGCAT 188222 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || | ||| | |||| || | |||| || || || || ||||| |||| | Sbjct 188224 CCACCCCTGAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGAC 188283 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || |||||||| || || || || || | ||||||||| | || Sbjct 188284 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 188343 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || |||||| ||| ||| || || | || | | ||||| || | ||||| Sbjct 188344 ATGCCCTCCTTATCCTGGATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCCACC 188403 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || | |||||||||||||| || || || || |||||||| ||||| || Sbjct 188404 TCAAGGGTGATGGTTTTGCCGGTGAGGGTTTTCACAAAGATCTGCATCTT 188453 >seq248 Length=436962 Score = 107 bits (118), Expect = 2e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 ||||||||| || | ||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 296153 ATTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 296212 Query 60121 CACTATACTACCGAGGA 60137 |||||||||| |||||| Sbjct 296213 CACTATACTAACGAGGA 296229 >seq692 Length=338404 Score = 104 bits (114), Expect = 3e-17 Identities = 78/92 (85%), Gaps = 5/92 (5%) Strand=Plus/Minus Query 60051 TTTATGAAAAAT-----TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACA 60105 |||| ||||||| || |||| || | ||||||||||||| |||||||||||||||| Sbjct 324998 TTTAAGAAAAATAAATGTTACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACA 324939 Query 60106 GGCGGACATACTCACCACTATACTACCGAGGA 60137 ||||| |||||||||||||||||| |||||| Sbjct 324938 GGCGGGGATACTCACCACTATACTAACGAGGA 324907 >seq547 Length=667685 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 272575 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 272634 Query 60126 TACTACCGAGGATTGA 60141 ||||| |||||| ||| Sbjct 272635 TACTAACGAGGAGTGA 272650 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 381656 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 381715 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 381716 TACTAACGAGGAATG 381730 Score = 95.1 bits (104), Expect = 1e-14 Identities = 74/88 (84%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 60053 TATGAAAAATTTT---CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCG 60109 ||||||||| || |||| || | |||||||||| || |||||||| ||||||||||| Sbjct 431792 TATGAAAAAGTTGTGCCTCCCCGTCGGGGAATCGAATCCCGGTCTCCCACGTGACAGGCG 431851 Query 60110 GACATACTCACCACTATACTACCGAGGA 60137 | |||||||||||||||||| |||||| Sbjct 431852 GGGATACTCACCACTATACTAACGAGGA 431879 >seq2560 Length=140597 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | ||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 97922 TTACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 97863 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 97862 CTATACTAACGAGGA 97848 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 || |||||| || | |||||| |||||| ||||||||||||||||||||| |||||||| Sbjct 80759 ATATTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 80700 Query 60121 CACTATACTACCGAGGA 60137 |||||||||| |||||| Sbjct 80699 CACTATACTAACGAGGA 80683 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 || |||||| || | |||||| |||||| ||||||||||||||||||||| |||||||| Sbjct 95160 ATATTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 95219 Query 60121 CACTATACTACCGAGGA 60137 |||||||||| |||||| Sbjct 95220 CACTATACTAACGAGGA 95236 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 97285 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 97226 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 97225 TACTAACGAGGA 97214 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 73260 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 73201 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 73200 TACTAACGAGGA 73189 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 || |||||| || | |||||| |||||| ||||||||||||||||| ||| |||||||| Sbjct 81252 ATATTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGACGGGGATACTCAC 81193 Query 60121 CACTATACTACCGAGGA 60137 |||||||||| |||||| Sbjct 81192 CACTATACTAACGAGGA 81176 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 83621 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 83562 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 83561 TACTAACGAGGA 83550 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 95589 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 95648 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 95649 TACTAACGAGGA 95660 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 96550 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 96491 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 96490 TACTAACGAGGA 96479 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||| Sbjct 86011 TTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 86070 Query 60124 TATACTACCGAGGA 60137 |||||| |||||| Sbjct 86071 CATACTAACGAGGA 86084 >seq4019 Length=31626 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 8579 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 8520 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 8519 TACTAACGAGGA 8508 >seq3750 Length=46836 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||| ||||| |||||||| |||||||||||| ||||| ||||||| Sbjct 166 CTCCCCGTCGGGGAATCTAACCCCGGTCTCCCACGTGACAGGCGGGGATACTGACCACTA 225 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 226 TACTAACGAGGA 237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571688190529400