Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13]
18,105 sequences; 801,711,499 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq1594 127 1e-24
seq619 91.5 1e-13
>seq1594
Length=294527
Score = 127 bits (140), Expect = 1e-24
Identities = 156/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| |||||||| | || ||||||||| ||||||||||| ||||| ||| | ||
Sbjct 188239 AGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 188298
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|||| |||||| || || || || |||| ||||||||| ||| | || |||||| ||
Sbjct 188299 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 188358
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | || | || | || | | || || || | |||||||||
Sbjct 188359 TGGATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTT 188418
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
||||||||||| |||||||||||||||||||||
Sbjct 188419 TTGCCGGTGAGGGTTTTCACAAAGATCTGCATC 188451
Score = 114 bits (126), Expect = 8e-21
Identities = 155/214 (72%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| || ||||| | ||| ||||||||| |||||||| |||||||| ||| | ||
Sbjct 183819 AGAACAAGGTGGAGGGTAGATTCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCC 183878
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|||| ||||||||| || || || |||| ||||||||| ||| | || |||||| ||
Sbjct 183879 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATC- 183937
Query 34298 GCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355
|| ||||| ||| | || | || | || | | || || |||| |||||||
Sbjct 183938 -CTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGG 183996
Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
| ||||||||||| || || || |||||||||||
Sbjct 183997 TCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 184030
Score = 111 bits (122), Expect = 1e-19
Identities = 142/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257
|||||| || || |||||||| ||||| ||| | || |||| |||||| || || ||
Sbjct 184295 TTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAA 184354
Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316
|| |||| ||||||||| ||| | || |||||| || || ||| ||||| | |
Sbjct 184355 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGAT-TTTGGCTTTGACGT 184413
Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376
| || | ||| | | ||| || |||| |||||||||||||||||||| || || |
Sbjct 184414 TCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGA 184473
Query 34377 CAAAGATCTGCAT 34389
|||||||||||||
Sbjct 184474 CAAAGATCTGCAT 184486
Score = 107 bits (118), Expect = 1e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| |||||||| | || || ||||| ||||||||||| ||||| ||| | ||
Sbjct 184047 AGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 184106
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|||| ||||||||| || || || |||| ||||||||| ||| | || |||||| ||
Sbjct 184107 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 184166
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | | | || | ||| | | || || |||| ||||||||
Sbjct 184167 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTC 184226
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
||||||||||| || || || |||||||||||
Sbjct 184227 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 184258
Score = 95.1 bits (104), Expect = 8e-15
Identities = 138/193 (72%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| ||||| ||||||||||| || || ||| | || |||| |||||| || || ||
Sbjct 188032 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAG 188091
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGAT 34316
|| |||| ||||||||| ||| | || |||||| || || ||||| ||| | |
Sbjct 188092 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATC--CTGGATTTTGGCCTTGACGT 188149
Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376
| || | || | | || || |||| |||||||||||||||||||| || || |
Sbjct 188150 TCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGA 188209
Query 34377 CAAAGATCTGCAT 34389
| |||||||||||
Sbjct 188210 CGAAGATCTGCAT 188222
>seq619
Length=304156
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 34161 ATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGG 34220
|||| || | ||| | ||||||||||| | || || ||||| ||||||||||| |
Sbjct 191818 ATCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCG 191759
Query 34221 ACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280
|||| ||| | || |||| ||| ||||| || || || || | ||||||||| |
Sbjct 191758 ACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAG 191699
Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340
| | || || || || |||||| ||| | | | || | || | | || |
Sbjct 191698 GAATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCA 191639
Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
| |||| || ||||| || || |||||||||||||| || |||||||||
Sbjct 191638 CCTCCAGGGTAATGGTCTTCCCAGTGAGAGTTTTCACGAAAATCTGCATC 191589
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323000712648800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |