Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq378 266 2e-66 seq703 102 6e-17 >seq378 Length=373364 Score = 266 bits (294), Expect = 2e-66 Identities = 598/878 (68%), Gaps = 24/878 (3%) Strand=Plus/Minus Query 107694 AGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAA 107753 ||| | || |||||| | || |||||||| ||||| |||||| |||| |||||||| || Sbjct 252151 AGTGAGGAGGAGCTAAATTTTCCCATTGCATACTCCATGGTGATCCACGAGAAGATAGAG 252092 Query 107754 AACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTG 107813 | |||||||| || || ||| | | ||||| || |||||||| ||||| ||||| | Sbjct 252091 ATGTTTGAACGACTCCTACGATCTATTTATGCTCCGCAGAACATCTACTGCGTCCATATT 252032 Query 107814 GATGTGAAGTCCCCAGAGACTTT-CAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCC 107872 || |||||| | | |||| || || ||| || |||| || |||||||||| || Sbjct 252031 GACCAGAAGTCTTCCCTGTCTTTTCACAG-GGCTGTGAAGGAAATAGTTTCCTGCTTTCC 251973 Query 107873 CAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCA 107932 |||||| || | |||||||| || | || || ||||| || |||||||||||||| Sbjct 251972 CAATGTTTTTGTAGCCAGTAAATTAGAAAGTGTTGTGTATGCTTCATGGTCCAGAGTGCA 251913 Query 107933 AGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTC---AGTGCCATGGAAGTACTT 107989 || || |||||||| ||| |||| |||| || ||| ||| | ||||| ||| | Sbjct 251912 GGCAGATCTGAACTGCATGAAAGATCTGCTGCA---CTCTGAAGTTCGGTGGAAATACCT 251856 Query 107990 ACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCT 108049 ||||||| || ||||||||||| ||||| || |||||| |||||||| |||| || Sbjct 251855 TTTGAATACCTGTGGGACAGACTTTCCCATCAAAACCAATAGGGAGATGGTGATGGCTCT 251796 Query 108050 CAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaa 108109 || | | || || | |||||| ||||| |||| || | || ||||| ||| Sbjct 251795 GAAAGTCCTCAATGGGAGGAACAGCATGGAAACTGAAGTCACCAGTGTCTCCAAGAAAGG 251736 Query 108110 TCGCTGGAAATACCGCTATGAGGT-GACAGACACACTGT-ACCCTACCAG-CAAGATGAA 108166 ||||||| | |||| | | | || | || || || | | | | | | || ||| Sbjct 251735 TCGCTGGCAGTACCACCACAATGTCGCCA---ACGGCGTCATCAGAACGGACGTGA-GAA 251680 Query 108167 GGACCCTCCCCCTGATAATTTACCC-ATGTTCACAGGGAATGCCTATTTTGTGGCCTCTC 108225 | || || | || | | ||| |||||| |||| || ||||| ||||||| |||| Sbjct 251679 AAAGCCCACCGCCCATCAGTAGCCCAATGTTCTCAGGAAACGCCTACTTTGTGGTCTCTA 251620 Query 108226 GAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCA 108285 | |||||||| || | || | | ||| | || | | | | ||||||| | Sbjct 251619 GGGCCTTTGTGAAATACGTGATGCAGAACGGAGAGGTTCAGAAATTCATGGAATGGGAAA 251560 Query 108286 AAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCG--TGCTCCGTGGAT 108343 ||||||| || || || ||||||||| | ||||||||||| ||| | || ||| | | | Sbjct 251559 AAGACACATACAGTCCAGACGAACACATGTGGGCCACCCTGCAGAGGATG-TCC-TCGGT 251502 Query 108344 GCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAG 108403 ||||| || || || ||| ||| ||| || ||||||| || ||||| | Sbjct 251501 TCCTGGATCAACGCCCCCAAACGGCAAATATGACACATCGGACATGATGGCTCTCGCCCG 251442 Query 108404 -GCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCT 108462 ||| ||||||||| || ||||| || | | || || || || || | Sbjct 251441 AGCT-GTCAAGTGGTCTTATTTAACAGGAGACGTGAAAAAAGGAGCTCCGTACTATCCAT 251383 Query 108463 GCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTC 108522 | || | | | |||| ||| | || | ||||| ||||| ||||| ||| | | Sbjct 251382 GTATGGGGACCTACAGGAGAGCCGTGTGTGTGTACGGCGCCGGCGACCTCCTGTGGCTCC 251323 Query 108523 TCCAGA-ACCATCACCTCTTGGCAAACAAGTTTGACCC 108559 | ||| | || |||||||| ||||| ||||||||||| Sbjct 251322 T-GAGACAGCAGCACCTCTTTGCAAATAAGTTTGACCC 251286 >seq703 Length=475644 Score = 102 bits (112), Expect = 6e-17 Identities = 191/278 (69%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 107754 AACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTG 107813 ||||||||||| ||||| |||||| | ||||| ||||||||||| || ||| | || ||| Sbjct 169089 AACTTTGAACGACTGCTACGAGCCATCTATGCACCTCAGAACATTTATTGTATTCATGTG 169148 Query 107814 GATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCC 107873 || || |||| || | |||| || | | ||| | ||||| |||||| Sbjct 169149 GACAAAAAATCCCAGCCCTCTGTAAAAGCTGCCATTACCAGCATCGTGTCCTGTTTCCCC 169208 Query 107874 AATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAA 107933 ||||||||||||| | | || || |||||||| || ||| | | || ||| Sbjct 169209 AATGTCTTCATGGTCGGACAGGCTGTGAGTGTGGTTTACGCTGGGTGGCCTCGTGTCCAA 169268 Query 107934 GCTGACCTGAACTGTATGGAAGACTTGCTCCA-GAGCTCAGTGC--CATGGAAGTACTTA 107990 |||||||| ||||| |||| ||| ||| | || | |||||| ||||| ||||| Sbjct 169269 GCTGACCTCAACTGCATGGCTGAC---CTCTATGAACGCAGTGCAGAGTGGAAATACTTC 169325 Query 107991 CTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 | || || || ||||||||| |||| ||||| Sbjct 169326 ATCAACCTCTGTGGACAAGACTTCCCTCTAAAAACCAA 169363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348191952856770