Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1594 109 4e-19 seq619 109 4e-19 >seq1594 Length=294527 Score = 109 bits (120), Expect = 4e-19 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| ||||| |||||||| || ||||||||||| | || || | |||| Sbjct 188239 AGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 188298 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| || || || || || ||| | ||| |||||||| Sbjct 188299 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 188358 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | ||| ||||||| |||||| |||| ||||||| || Sbjct 188359 TGGATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTT 188418 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAA--ACTCTTATAAAT 18343 |||||||| | ||||| ||||| || ||||| || | || |||||||| Sbjct 188419 TTGCCGGTGAGGGTTTTCACAAAGATCTGCATCTTGCACCACCTTTATAAAT 188470 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || ||||||||||| || |||||||| | || || | |||||||| || Sbjct 184284 TGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGC 184343 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| |||| || || || || || ||| | ||| |||||||| |||| | Sbjct 184344 TTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTT-T 184402 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || ||||| | ||| ||||| | ||| || || | ||||||| |||||||||| Sbjct 184403 GGCTTTGACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGT 184462 Query 18302 CAATGTTTTTACAAAAATTTGCATTTTT 18329 | || || ||||| || ||||| ||| Sbjct 184463 GAGGGTCTTGACAAAGATCTGCATGTTT 184490 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| |||||| || || || || || ||||||||||| | || || | |||| Sbjct 184047 AGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 184106 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || ||| | ||| |||||||| Sbjct 184107 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 184166 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | ||| ||||| | |||||| || | ||||||| | Sbjct 184167 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTC 184226 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||| | || || || || || ||||| Sbjct 184227 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 184258 >seq619 Length=304156 Score = 109 bits (120), Expect = 4e-19 Identities = 167/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 18097 ATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGG 18156 ||||||||| || | || |||| ||| || || || || || || ||||||||||| | Sbjct 191818 ATCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCG 191759 Query 18157 CCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGG 18216 || || | |||||||| |||||||| ||| |||| ||||| || || || | Sbjct 191758 ACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAG 191699 Query 18217 GCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | | |||||| ||||| ||| | | ||| || | ||| ||||||| |||||| Sbjct 191698 GAATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCA 191639 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAACT 18334 || | ||| ||| | || || || | ||||| || ||||| ||||| |||||||| Sbjct 191638 CCTCCAGGGTAATGGTCTTCCCAGTGAGAGTTTTCACGAAAATCTGCATCTTTAAACT 191581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379260295968225