Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13]
18,105 sequences; 801,711,499 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq406 461 7e-125
seq541 118 9e-22
seq1594 107 2e-18
seq619 82.4 7e-11
>seq406
Length=364117
Score = 461 bits (510), Expect = 7e-125
Identities = 1030/1539 (67%), Gaps = 29/1539 (2%)
Strand=Plus/Minus
Query 22409 TCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAAC 22468
|||||||||| || | |||| || |||| || ||| |||| || | || |||
Sbjct 267936 TCGTTCCACAGGCCACGCTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGACGATCTGGAAC 267877
Query 22469 TCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTG 22528
|| ||||||| || | ||| ||| |||||| ||| ||| |||| || || |||
Sbjct 267876 TCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTG 267817
Query 22529 TTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTC 22588
|| ||||| ||||| ||||| || || || ||||| ||||||| ||| || ||| |||
Sbjct 267816 TTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTC 267757
Query 22589 AAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTC 22648
| |||||| || | || || ||| |||| | |||||||||||| |||| ||| |||
Sbjct 267756 ACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTCGGTGTC 267697
Query 22649 ACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGC-TGCCTTCGTACGT 22707
|| |||||||| ||||| || | | ||| || | |||| ||| ||||||||
Sbjct 267696 ---TTCTCCCACATGTCGTACTGGAGGATGCCCTTGCT-GATGGGCGAGCCCTCGTACGT 267641
Query 22708 TTCGTACGGACC-ATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATA 22766
||||| || || | | | ||||| ||||||||||| ||||||| ||| ||| || |
Sbjct 267640 CTCGTAGGGGCCGAGCTCT-GCGGCGAGTTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGA 267582
Query 22767 TAGTCTCGAAGATTTTCTTGTTCAATTCGGC--GGCGGCGACGCTTTCGTACGGCATACG 22824
| ||||||||||| | |||| | | || ||| || ||||||| |||| ||
Sbjct 267581 TGGTCTCGAAGATCTGGATGTTGA--GCAGCTGGGCTTCGGGGCTTTCGAACGGATGTCG 267524
Query 22825 CATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAG 22884
||||| | ||| || || |||| |||||| ||||| || |||||||| | || |
Sbjct 267523 CATCAGGATGAAGGCATCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTT 267464
Query 22885 ATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTT 22944
|| ||| | || ||||| | || || |||| ||||| | |||| | |||
Sbjct 267463 GTTGGACGTCTCGGCTTCGGGGACCGGGTAGTAATTGATGTCGATGATCTTGTTGAGGTT 267404
Query 22945 TCTGGTCACAATT---TTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTG 23001
| |||| ||| || || | | |||||| || | | | |
Sbjct 267403 T---TTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGG 267347
Query 23002 TACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGA 23061
|| || |||||| |||||| ||||| || ||||| |||||||||||||| |||
Sbjct 267346 CGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCT 267287
Query 23062 CGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTG 23121
|||||||| || | || || || || ||||| || || || ||||||| || |||
Sbjct 267286 GGTGTACTCCACCACCTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTG 267227
Query 23122 GTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTG 23181
|||||| || | ||||| | ||||||||||||||||| ||||| || || ||| |||
Sbjct 267226 GTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTG 267167
Query 23182 CGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGT--ACCTGCCT 23239
||||||||||| || ||| | ||| || | ||| | | | | ||| |||
Sbjct 267166 GGACTCGATGATGGCGTACCAGAGCTGCTGCGCCT--TCACCACCCTCTTCACCCTCCCT 267109
Query 23240 TCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCG 23299
|| | ||| || | ||| | | || || || | || | || ||| |||| ||
Sbjct 267108 TCCTTCTCATATCTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCA 267049
Query 23300 GGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAA 23359
|| | | | |||||||| | ||| || |||| || | |||| ||
Sbjct 267048 GGACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTTTCCACTCTCTTCATGAAC 266989
Query 23360 AGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTG 23419
|| ||||| ||||| | |||||||| || || | ||| | | |||||| || || |||
Sbjct 266988 AGGTCCGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTG 266929
Query 23420 TTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCA 23479
||||| |||| |||| ||||| |||||||| |||||||| || ||||| | ||||
Sbjct 266928 TTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGTTCCAGGTACATGGCA 266869
Query 23480 AACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACT 23539
|| || || |||||||| ||||||||||| |||||||| || |||||||||||||| |||
Sbjct 266868 AAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACT 266809
Query 23540 CTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTT-- 23597
|| |||||||| || | |||||||| |||| ||| || | | | |||
Sbjct 266808 CTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGCCGGCAA----TGTAGCTTCC 266753
Query 23598 --TTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGC 23655
| | ||| | | | || | || || || || | || || || || | |||
Sbjct 266752 CGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCCCCAGCGGACTTGGAAATGAGCGC 266693
Query 23656 GCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAA 23715
||| || ||||| |||||||||||||| ||||||||||| || || | || | || |||
Sbjct 266692 GCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCAAGCAGGAA 266633
Query 23716 ACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGT 23775
|| |||| |||| | || |||| ||| || ||||| |||||| ||
Sbjct 266632 GCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGT 266573
Query 23776 AAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTG 23835
|| | | ||||| || ||||| || |||||||| || |||||||| |||||
Sbjct 266572 GAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGATGGCAGCGTCAATGTCTCGCCCGTG 266513
Query 23836 TATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAAT 23895
|| || | | || | ||| | ||||| || || | |||| || ||||| ||
Sbjct 266512 GATCCCAACCGACACCCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTCCCGTTGAT 266453
Query 23896 TTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAA 23934
|| | ||| || || || | || || || || || ||
Sbjct 266452 CTTCAGCAGGTAGGAGCGCTCCAGAGTCTTGAAACCGAA 266414
>seq541
Length=321934
Score = 118 bits (130), Expect = 9e-22
Identities = 116/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106
|||||| ||| | ||||| || || || || || || |||||||| |||| || ||
Sbjct 160830 CACCTCATCTCTACTTGTGTATTCGACGATCTCTGTGCAGAGATTGCTGGACTTGATGGT 160889
Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166
||||| ||| ||||||| | || | ||||| | |||||||||||||||||||||||
Sbjct 160890 GCCCAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGT 160949
Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGC 23196
|||||||| ||||||||||||||| ||
Sbjct 160950 ACCCGTCTCTGTCTGCGACTCGATGATGGC 160979
Score = 114 bits (126), Expect = 1e-20
Identities = 119/156 (76%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399
|||| || || ||||||| || || || ||||| | || ||||||| || | ||| |
Sbjct 161304 TTTCCACTCGCTTCATAAAGAGGTCTGGAATCCACAAGGCAAAGAACAGGTCTCTGGCTC 161363
Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459
| ||| ||||| || |||||||| |||| |||||||| || |||||||| |||||||
Sbjct 161364 TCTGCTCTTCTTTACCCGTGTTCTTCTTCAGCTCCAAAAACTCAAACACGTCAGCATGCC 161423
Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495
||||||| ||||| || | || || || |||||||
Sbjct 161424 ACGGCTCCAGGTACACAGAGAAGGCCCCTGGTCTCT 161459
>seq1594
Length=294527
Score = 107 bits (118), Expect = 2e-18
Identities = 163/232 (70%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247
|||||||||| || || || ||||| || || |||||||| |||||| | || || ||||
Sbjct 184491 CAAACATGCAGATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAAC 184432
Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
| ||||| | || | |||||| | ||| ||| ||||| ||| | || || |
Sbjct 184431 CCAGCGACACCATTGAGAACGTCAAAGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTG 184372
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367
|||||||| | || || || || || || ||| ||||||| || || || |
Sbjct 184371 ACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACT 184312
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
| || || ||||||||||| || || ||||| || || | |||||||| ||
Sbjct 184311 ACAATATCCAAAAAGAATCCACCCTCCATCTTGTCCTCCGTCTGAGGGGTGG 184260
>seq619
Length=304156
Score = 82.4 bits (90), Expect = 7e-11
Identities = 159/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248
||| ||||| |||||||| || ||||| || || || || || ||| | || || || ||
Sbjct 191586 AAAGATGCAGATTTTCGTGAAAACTCTCACTGGGAAGACCATTACCCTGGAGGTGGAGCC 191645
Query 31249 GTCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
|||| | || | || || || ||| | ||| || |||||| | || || |
Sbjct 191646 CAGTGACACCATTGAGAACGTGAAGGCAAAGATTCA-GGATAAAGAAGGCATTCCTCCTG 191704
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367
|||||||| | || || || |||||||||||| ||||||| || || || |
Sbjct 191705 ACCAGCAGAGACTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCGGACT 191764
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
| ||||| || || || || || || || ||||| || | |||||||| ||
Sbjct 191765 ACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGAGGGGAGG 191816
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445665517491600
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