Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq406 461 7e-125 seq541 118 9e-22 seq1594 107 2e-18 seq619 82.4 7e-11 >seq406 Length=364117 Score = 461 bits (510), Expect = 7e-125 Identities = 1030/1539 (67%), Gaps = 29/1539 (2%) Strand=Plus/Minus Query 22409 TCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAAC 22468 |||||||||| || | |||| || |||| || ||| |||| || | || ||| Sbjct 267936 TCGTTCCACAGGCCACGCTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGACGATCTGGAAC 267877 Query 22469 TCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTG 22528 || ||||||| || | ||| ||| |||||| ||| ||| |||| || || ||| Sbjct 267876 TCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTG 267817 Query 22529 TTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTC 22588 || ||||| ||||| ||||| || || || ||||| ||||||| ||| || ||| ||| Sbjct 267816 TTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTC 267757 Query 22589 AAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTC 22648 | |||||| || | || || ||| |||| | |||||||||||| |||| ||| ||| Sbjct 267756 ACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTCGGTGTC 267697 Query 22649 ACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGC-TGCCTTCGTACGT 22707 || |||||||| ||||| || | | ||| || | |||| ||| |||||||| Sbjct 267696 ---TTCTCCCACATGTCGTACTGGAGGATGCCCTTGCT-GATGGGCGAGCCCTCGTACGT 267641 Query 22708 TTCGTACGGACC-ATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATA 22766 ||||| || || | | | ||||| ||||||||||| ||||||| ||| ||| || | Sbjct 267640 CTCGTAGGGGCCGAGCTCT-GCGGCGAGTTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGA 267582 Query 22767 TAGTCTCGAAGATTTTCTTGTTCAATTCGGC--GGCGGCGACGCTTTCGTACGGCATACG 22824 | ||||||||||| | |||| | | || ||| || ||||||| |||| || Sbjct 267581 TGGTCTCGAAGATCTGGATGTTGA--GCAGCTGGGCTTCGGGGCTTTCGAACGGATGTCG 267524 Query 22825 CATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAG 22884 ||||| | ||| || || |||| |||||| ||||| || |||||||| | || | Sbjct 267523 CATCAGGATGAAGGCATCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTT 267464 Query 22885 ATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTT 22944 || ||| | || ||||| | || || |||| ||||| | |||| | ||| Sbjct 267463 GTTGGACGTCTCGGCTTCGGGGACCGGGTAGTAATTGATGTCGATGATCTTGTTGAGGTT 267404 Query 22945 TCTGGTCACAATT---TTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTG 23001 | |||| ||| || || | | |||||| || | | | | Sbjct 267403 T---TTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGG 267347 Query 23002 TACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGA 23061 || || |||||| |||||| ||||| || ||||| |||||||||||||| ||| Sbjct 267346 CGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCT 267287 Query 23062 CGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTG 23121 |||||||| || | || || || || ||||| || || || ||||||| || ||| Sbjct 267286 GGTGTACTCCACCACCTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTG 267227 Query 23122 GTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTG 23181 |||||| || | ||||| | ||||||||||||||||| ||||| || || ||| ||| Sbjct 267226 GTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTG 267167 Query 23182 CGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGT--ACCTGCCT 23239 ||||||||||| || ||| | ||| || | ||| | | | | ||| ||| Sbjct 267166 GGACTCGATGATGGCGTACCAGAGCTGCTGCGCCT--TCACCACCCTCTTCACCCTCCCT 267109 Query 23240 TCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCG 23299 || | ||| || | ||| | | || || || | || | || ||| |||| || Sbjct 267108 TCCTTCTCATATCTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCA 267049 Query 23300 GGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAA 23359 || | | | |||||||| | ||| || |||| || | |||| || Sbjct 267048 GGACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTTTCCACTCTCTTCATGAAC 266989 Query 23360 AGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTG 23419 || ||||| ||||| | |||||||| || || | ||| | | |||||| || || ||| Sbjct 266988 AGGTCCGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTG 266929 Query 23420 TTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCA 23479 ||||| |||| |||| ||||| |||||||| |||||||| || ||||| | |||| Sbjct 266928 TTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGTTCCAGGTACATGGCA 266869 Query 23480 AACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACT 23539 || || || |||||||| ||||||||||| |||||||| || |||||||||||||| ||| Sbjct 266868 AAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACT 266809 Query 23540 CTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTT-- 23597 || |||||||| || | |||||||| |||| ||| || | | | ||| Sbjct 266808 CTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGCCGGCAA----TGTAGCTTCC 266753 Query 23598 --TTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGC 23655 | | ||| | | | || | || || || || | || || || || | ||| Sbjct 266752 CGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCCCCAGCGGACTTGGAAATGAGCGC 266693 Query 23656 GCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAA 23715 ||| || ||||| |||||||||||||| ||||||||||| || || | || | || ||| Sbjct 266692 GCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCAAGCAGGAA 266633 Query 23716 ACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGT 23775 || |||| |||| | || |||| ||| || ||||| |||||| || Sbjct 266632 GCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGT 266573 Query 23776 AAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTG 23835 || | | ||||| || ||||| || |||||||| || |||||||| ||||| Sbjct 266572 GAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGATGGCAGCGTCAATGTCTCGCCCGTG 266513 Query 23836 TATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAAT 23895 || || | | || | ||| | ||||| || || | |||| || ||||| || Sbjct 266512 GATCCCAACCGACACCCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTCCCGTTGAT 266453 Query 23896 TTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAA 23934 || | ||| || || || | || || || || || || Sbjct 266452 CTTCAGCAGGTAGGAGCGCTCCAGAGTCTTGAAACCGAA 266414 >seq541 Length=321934 Score = 118 bits (130), Expect = 9e-22 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 |||||| ||| | ||||| || || || || || || |||||||| |||| || || Sbjct 160830 CACCTCATCTCTACTTGTGTATTCGACGATCTCTGTGCAGAGATTGCTGGACTTGATGGT 160889 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| ||| ||||||| | || | ||||| | ||||||||||||||||||||||| Sbjct 160890 GCCCAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGT 160949 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGC 23196 |||||||| ||||||||||||||| || Sbjct 160950 ACCCGTCTCTGTCTGCGACTCGATGATGGC 160979 Score = 114 bits (126), Expect = 1e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || || ||||||| || || || ||||| | || ||||||| || | ||| | Sbjct 161304 TTTCCACTCGCTTCATAAAGAGGTCTGGAATCCACAAGGCAAAGAACAGGTCTCTGGCTC 161363 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 | ||| ||||| || |||||||| |||| |||||||| || |||||||| ||||||| Sbjct 161364 TCTGCTCTTCTTTACCCGTGTTCTTCTTCAGCTCCAAAAACTCAAACACGTCAGCATGCC 161423 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||| ||||| || | || || || ||||||| Sbjct 161424 ACGGCTCCAGGTACACAGAGAAGGCCCCTGGTCTCT 161459 >seq1594 Length=294527 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||||||||| || || || ||||| || || |||||||| |||||| | || || |||| Sbjct 184491 CAAACATGCAGATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAAC 184432 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||| | || | |||||| | ||| ||| ||||| ||| | || || | Sbjct 184431 CCAGCGACACCATTGAGAACGTCAAAGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTG 184372 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||| | || || || || || || ||| ||||||| || || || | Sbjct 184371 ACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACT 184312 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | || || ||||||||||| || || ||||| || || | |||||||| || Sbjct 184311 ACAATATCCAAAAAGAATCCACCCTCCATCTTGTCCTCCGTCTGAGGGGTGG 184260 >seq619 Length=304156 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| |||||||| || ||||| || || || || || ||| | || || || || Sbjct 191586 AAAGATGCAGATTTTCGTGAAAACTCTCACTGGGAAGACCATTACCCTGGAGGTGGAGCC 191645 Query 31249 GTCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 |||| | || | || || || ||| | ||| || |||||| | || || | Sbjct 191646 CAGTGACACCATTGAGAACGTGAAGGCAAAGATTCA-GGATAAAGAAGGCATTCCTCCTG 191704 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||| | || || || |||||||||||| ||||||| || || || | Sbjct 191705 ACCAGCAGAGACTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCGGACT 191764 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | ||||| || || || || || || || ||||| || | |||||||| || Sbjct 191765 ACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGAGGGGAGG 191816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445665517491600