Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq406 439 4e-118 seq768 102 1e-16 seq120 93.3 6e-14 >seq406 Length=364117 Score = 439 bits (486), Expect = 4e-118 Identities = 1302/1981 (66%), Gaps = 35/1981 (2%) Strand=Plus/Minus Query 78966 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCT 79025 |||||||||||| | ||| || | | | ||||| ||||| || ||||| | | Sbjct 267979 CTGAATGGATCCGTTGTTTGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCACG 267920 Query 79026 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 79085 ||| || | | | ||||| || || || || | || || ||||| |||| || || Sbjct 267919 CTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCT 267860 Query 79086 CCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGC 79145 || ||||| || || ||||| || | || | || || || || |||| || || || Sbjct 267859 GCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 267800 Query 79146 AGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGAT 79205 || || ||||| ||||| || |||| || | || || || | |||| | ||| Sbjct 267799 GGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGAT 267740 Query 79206 TTTATCTTTTAG-AGATTCCCAATCCCAAAGATCAGACGG-GACAACATTCCAAAGATCA 79263 || || || || || |||| | ||||| || || | ||| | | | | ||| | || Sbjct 267739 CTTCTCCTTCAGCAGCTTCC-AGTCCCACAGGTCGGTCGGTGTCTTC-TCCCACATGTCG 267682 Query 79264 TATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTT 79323 || || || || || || || | || || ||| || || || || || || | Sbjct 267681 TACTGGAGGATGCCCTTGCTGATGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCT 267622 Query 79324 TCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTA 79383 |||| | ||| || || ||||| | || ||| || ||||| ||||| |||| | Sbjct 267621 GCGGCGAGTTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATG 267562 Query 79384 TTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 79443 ||||| || ||||| |||| || || |||| | || || || || || || Sbjct 267561 TTGAGCAGCTGGGCTTCGGGGCTTTCGAACGGATGTCGCATCAGGATGAAGGCATCGGCC 267502 Query 79444 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGA 79503 | || || || || || ||||| || || || | ||| || || | || ||||| || Sbjct 267501 AGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGACGTCTCGGCTTCGGGG 267442 Query 79504 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACA 79563 | || || ||||| || || || || || ||||| || | || ||||| ||| || Sbjct 267441 ACCGGGTAGTAATTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACG 267382 Query 79564 TCCTTTAGTTTGAGAAAATCAAATCGTCCA-TCTA---TTACAAACATGTTCAACGCGAC 79619 || || || || || |||| ||| | || ||||||| | |||| Sbjct 267381 GAGGCCAGCTTCTTGAAGTCGAAA-GTCCGCTCTGGCGTGACGTACATGTTGAGGGCGAT 267323 Query 79620 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCC--GCATATTGTATTATTTCAGTG 79677 || ||||| || || ||||| ||||| | | | | | || | | | || ||| Sbjct 267322 GGAGGCCAGGTTGCAGACGGCCACCTCGTC--CTTGCTGGTGTACTCCACCACCTCTGTG 267265 Query 79678 CAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 79737 |||||||| || || || ||||| || | || || || || ||||| |||| || || Sbjct 267264 CAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCG 267205 Query 79738 TCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 79797 ||||| || || ||| | || || || ||||| |||| || || || || || | |||| Sbjct 267204 TCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAG 267145 Query 79798 A-CGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATT--GTGTATAT 79854 | | || | ||||| | | ||| ||| ||| | || ||| ||||| | Sbjct 267144 AGCTGCT-GCGCCTTCACCACCCTCTTCACCCTCCCTTCCTTCTCATATCTGGTGTAGAG 267086 Query 79855 AATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATC 79914 || |||||||| |||||||| ||||| | |||||||| ||| ||||||||| Sbjct 267085 CTTC--TCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACACTCGCTGGGACACATC 267028 Query 79915 AACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 79972 || ||||| || | | |||| |||| ||||| || || || || ||||| | | Sbjct 267027 AAGGACCAGTCCTGGT--TGCTTTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGG 266970 Query 79973 C-TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 80031 | || ||| || ||||||| ||| |||||||| |||||||| ||||| || || || ||| Sbjct 266969 CGTAGAAA-AGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGG 266911 Query 80032 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTG 80091 || | | | || | ||||||||||||| ||| ||||| | | || |||| ||| Sbjct 266910 AAGTCGAACACGTCGAAGTGCCACGGTTCCAGGTACATGGCAAAGGCCCCGGGTCTCTTG 266851 Query 80092 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 80151 || || ||||| || | ||| | ||| ||||| || |||||||||| ||| || | | Sbjct 266850 TTGCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAAT 266791 Query 80152 CCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATT 80211 || ||||| | || ||||| |||| || |||||||| | | || || || | Sbjct 266790 CCGTTGGAGTTGCCGTTGGTGCCGGCAATGTAGCTTCCCGTCGATCGGATGCAGCTCACC 266731 Query 80212 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 80271 | | || || ||||| || || || || | ||||| | || | || || ||| Sbjct 266730 GCCACGCCGATCCCCCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAG 266671 Query 80272 ATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 80331 ||||| || ||||| || || ||||| ||| || || ||||| |||| || | || Sbjct 266670 ATGCCTTCGATGCTGTCGTCCTTCATGGCAAGCAGGAAGCAGCTGGACAGCTGCGGCCGG 266611 Query 80332 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGA 80391 | || || || || || | ||| ||||| ||||| || ||||| || || ||||| || Sbjct 266610 TTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGG 266551 Query 80392 TTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATT 80451 ||||| ||||| || || | || || || | || || || |||| || | ||| Sbjct 266550 TTGTAGGTCTCGATGGCAGCGTCAATGTCTCGCCCGTGGATCCCAACCGACACCCTCATG 266491 Query 80452 AACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCC 80511 | ||||||||| || | || | | || || || |||| || ||| || ||| Sbjct 266490 AGCATGTGCTGCGGCCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCC 266431 Query 80512 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTG 80571 | ||| || ||||| || ||||||| || || |||| |||||||| || || ||| Sbjct 266430 AGAGTCTTGAAACCGAAGAAGTTGTAGGAGAAATCTCTGTCGTAAATGATGGAGGAATTG 266371 Query 80572 AGTTTATCCTTATATTTGTTAACTACATCCATGGTGATACTT-GAAATAATCGGAGAAT- 80629 || ||||| | || | || | || | || | ||| || || || ||||| | Sbjct 266370 AGGCGGTCCTTGTTTTCCATGACGATGTCGAGCGT-CTCCTTGGAGATCATGGGAGAGTG 266312 Query 80630 --GTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAG 80687 |||| || ||| || || ||| ||| | || |||||||| || || || | Sbjct 266311 GCGTTT---GTTCAGAGGGTTGACGTAGGCGAACAGGTCTTCCATCACCTCGCTGAACAC 266255 Query 80688 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATC 80747 || || || |||||||| || || || ||||| || || ||||| | ||||| || || Sbjct 266254 CTTCTTGGTCTCCTTGTGCAGGTTGGAGACGGCAATCCTCGCGGCCAGGATGGCGTAGTC 266195 Query 80748 TGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 80807 || |||| || || ||||| || || || || || || ||||| | || || || Sbjct 266194 GGGGTGTTTGGTCGTCAGGGTGGCCGCGATCTCCGCCGCTAGCGTGTCAAGCTCCACGGT 266135 Query 80808 TGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATG 80867 || || || | || | || ||||| |||||||| | || | | ||||| | | Sbjct 266134 GGTGACGCCGCTGTACAAGCCCTGGATCACCTTCATGGTGATCTGAGCTGGATCCACAAA 266075 Query 80868 ATCAGTGTTTAAGCCATAACATAATTTTCT-AATACGAGACGTGATTTTATCAAACATGA 80926 || | ||| | ||| || || || |||| || || || ||||||||||| ||||||| Sbjct 266074 GTCCGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGCGGGAGGTGATTTTATCGAACATGA 266016 Query 80927 C 80927 | Sbjct 266015 C 266015 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| ||||| || || ||||| || |||| || || || ||||| | Sbjct 268242 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTCGGCTCAGCGATGTGGATGT 268183 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| || || || || |||||||||||||| | |||||| ||||| | | | |||| Sbjct 268182 TCAGCGACTGGCTCTGGTCGATGAAGGCTCCACGGTCTGCCGCCATCCTCAGCACGGTCT 268123 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 78953 | || | |||||||||| |||||||| | |||| | || ||||| Sbjct 268122 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGGTCCTCTGG 268074 >seq768 Length=308456 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 ||||||||| ||| || || |||||| || || || || ||||| ||||| | ||| | Sbjct 127963 CCTCGTCTCGACTGATGAGCTCGTTGCTGAAGGTCAGGCCAGGCATCAGGCCTCTCTTCT 127904 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || |||| || || || ||||| ||||||||||| || || || || |||| Sbjct 127903 TCAGCCAGAAGATGGCGGCGAACGAACCAGAGAAGAAGATTCCCTCCACGGCAGCGAAGG 127844 Query 50102 CAACAAGTCTCTCTCC 50117 | || | ||||||||| Sbjct 127843 CCACCACTCTCTCTCC 127828 >seq120 Length=551038 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 ||||||| || ||||| ||||||||||| | || || || ||||| ||||| | ||| | Sbjct 520407 CCTCGTCCCTGCTAATGAGTTCGTTGGAGTAGGTAAGGCCTGGCATGAGGCCTCTCTTCT 520348 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| | || | || ||||| || || |||||||| || || ||||| || || | Sbjct 520347 TCAGCCAGTAGATAGCAGCGAATGAGCCTGAGAAGAAGATCCCCTCCACTGCTGCGAAAG 520288 Query 50102 CAACAAGTCTCTCTCC 50117 | ||||| | ||| || Sbjct 520287 CCACAAGACGCTCCCC 520272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718106246792200