Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq406 425 7e-114 seq541 116 5e-21 seq768 84.2 3e-11 >seq406 Length=364117 Score = 425 bits (470), Expect = 7e-114 Identities = 1292/1980 (65%), Gaps = 33/1980 (2%) Strand=Plus/Minus Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108 |||||||||||| | ||| || | | | || || ||||| || ||||| | | Sbjct 267979 CTGAATGGATCCGTTGTTTGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCACG 267920 Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168 ||| || | | | ||||| ||||| || || | || || ||||| |||| || || Sbjct 267919 CTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCT 267860 Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228 || ||||| || || ||||| |||| || | ||||| || || |||| || || || Sbjct 267859 GCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 267800 Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGAT 71288 || || || || ||||| || |||| || || || || || | || ||| ||| Sbjct 267799 GGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGAT 267740 Query 71289 TTTATCTTTTAG-AGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNN 71347 || || || || || |||| | | ||| || || | ||| Sbjct 267739 CTTCTCCTTCAGCAGCTTCC-AGTCCCACAGGTCGGTCGGTGTCTTCTCCCACATGTCGT 267681 Query 71348 NNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTT 71407 ||||| || || | || || | || || ||||| || || | | Sbjct 267680 ACTGGAGGATGCCCTTGCTGATGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTG 267621 Query 71408 CGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTAT 71467 |||| ||||| || || ||||| | || | | || ||||| ||||| |||| | | Sbjct 267620 CGGCGAGTTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGT 267561 Query 71468 TGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 71527 |||| || ||||| ||||| || || |||| | || || || || || || | Sbjct 267560 TGAGCAGCTGGGCTTCGGGGCTTTCGAACGGATGTCGCATCAGGATGAAGGCATCGGCCA 267501 Query 71528 ATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAA 71587 || || ||||| || ||||| || ||||| | ||| || || | || ||||| || | Sbjct 267500 GACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGACGTCTCGGCTTCGGGGA 267441 Query 71588 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACAT 71647 || || ||||| || || || || || ||||| ||| | || ||||| ||| || Sbjct 267440 CCGGGTAGTAATTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGG 267381 Query 71648 CCTTTAGTTTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGCAACAG 71704 || || || || || ||| ||| | || ||| ||| | ||| | | Sbjct 267380 AGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTGAGGGCGATGG 267321 Query 71705 ATGCCAGATTACAAACGGCTACCTCAT--TAGCATCGGCATATTGTATAATTTCAGTGCA 71762 | ||||| || || ||||| ||||| | | || || || | | | || ||||| Sbjct 267320 AGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCT--GGTGTACTCCACCACCTCTGTGCA 267263 Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822 || || || || |||||||| || | || || || || ||||| |||| || || || Sbjct 267262 GAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTC 267203 Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA- 71881 ||| || || || | || || || ||||| |||| || || || || || | ||||| Sbjct 267202 CTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAG 267143 Query 71882 CGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATT--GTGTATATAA 71939 | || | ||||| | | |||| ||| ||| | || ||| ||||| | Sbjct 267142 CTGCT-GCGCCTTCACCACCCTCTTCACCCTCCCTTCCTTCTCATATCTGGTGTAGAGCT 267084 Query 71940 TCGTTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCA 71998 || |||||||| |||||||| ||| | ||| | |||||||| || | |||||||||| Sbjct 267083 TC--TCGAACTCCTCTCCCCA-GCACTCGTCCAGCCCAGGACACTCGCTGGGACACATCA 267027 Query 71999 ATGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 72056 | ||||| || | | ||| |||| ||||| || || || || ||||| | || Sbjct 267026 AGGACCAGTCCTGGT--TGCTTTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGC 266969 Query 72057 -TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 72115 || ||| || ||||||| ||| |||||||| |||||||| ||||| || || || |||| Sbjct 266968 GTAGAAA-AGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGA 266910 Query 72116 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGT 72175 | | | | || | ||||||||||||| ||| ||||| | | || || | |||| Sbjct 266909 AGTCGAACACGTCGAAGTGCCACGGTTCCAGGTACATGGCAAAGGCCCCGGGTCTCTTGT 266850 Query 72176 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 72235 | || ||||| || | ||| | ||| ||||| || |||||||||| ||| || | | | Sbjct 266849 TGCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATC 266790 Query 72236 CATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTG 72295 | ||||| || ||||| |||| || |||||||| | | || || ||| | | Sbjct 266789 CGTTGGAGTTGCCGTTGGTGCCGGCAATGTAGCTTCCCGTCGATCGGATGCAGCTCACCG 266730 Query 72296 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 72355 | || || ||||| || || || || | ||||| | || | || || |||| Sbjct 266729 CCACGCCGATCCCCCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGA 266670 Query 72356 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 72415 |||| || || || || ||| ||||| ||| || || ||||| |||| || | || Sbjct 266669 TGCCTTCGATGCTGTCGTCCTTCATGGCAAGCAGGAAGCAGCTGGACAGCTGCGGCCGGT 266610 Query 72416 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 72475 | || || || || || | ||| ||||| ||||| || ||||| || || ||||| || | Sbjct 266609 TGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGT 266550 Query 72476 TGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTA 72535 |||| ||||| || || | || || || | || || || |||| || | ||| | Sbjct 266549 TGTAGGTCTCGATGGCAGCGTCAATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGA 266490 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 ||| ||||| || | || | | || || || |||| || |||||| |||| Sbjct 266489 GCATGTGCTGCGGCCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCCA 266430 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGA 72655 ||| || ||||| || ||||||| || || |||| |||||||| || ||||||| Sbjct 266429 GAGTCTTGAAACCGAAGAAGTTGTAGGAGAAATCTCTGTCGTAAATGATGGAGGAATTGA 266370 Query 72656 GTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAAT-- 72712 | ||||| | || | || || || | || | ||| || || || ||||| | Sbjct 266369 GGCGGTCCTTGTTTTCCATGACGATGTCGAGCGT-CTCCTTGGAGATCATGGGAGAGTGG 266311 Query 72713 -GTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGt 72771 |||| || ||| || || ||| ||| | || |||||||| || || || | Sbjct 266310 CGTTT---GTTCAGAGGGTTGACGTAGGCGAACAGGTCTTCCATCACCTCGCTGAACACC 266254 Query 72772 ttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCT 72831 || || || |||||||| || || || ||||| || || ||||| || ||||| || || Sbjct 266253 TTCTTGGTCTCCTTGTGCAGGTTGGAGACGGCAATCCTCGCGGCCAGGATGGCGTAGTCG 266194 Query 72832 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTT 72891 || |||| || || ||||| || || || || || || ||||| | || || || Sbjct 266193 GGGTGTTTGGTCGTCAGGGTGGCCGCGATCTCCGCCGCTAGCGTGTCAAGCTCCACGGTG 266134 Query 72892 GTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGA 72951 || || || | || | || ||||| |||||||| | || | | ||||| | | Sbjct 266133 GTGACGCCGCTGTACAAGCCCTGGATCACCTTCATGGTGATCTGAGCTGGATCCACAAAG 266074 Query 72952 TCAGTGTTTAAGCCATAACATAATTTTCT-AATACGAGACGTGATTTTATCAAACATAAC 73010 || | ||| | ||| || || || |||| || || || ||||||||||| ||||| || Sbjct 266073 TCCGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGCGGGAGGTGATTTTATCGAACATGAC 266015 Score = 102 bits (112), Expect = 1e-16 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| || ||||| || || ||||| ||| | || || || ||||| || | Sbjct 268242 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTCGGCTCAGCGATGTGGATGT 268183 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| |||||| || || |||||||||||||| | |||||| ||||| | | | |||| Sbjct 268182 TCAGCGACTGGCTCTGGTCGATGAAGGCTCCACGGTCTGCCGCCATCCTCAGCACGGTCT 268123 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 71036 | || | |||||||||| |||||||| | |||| | || ||||| Sbjct 268122 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGGTCCTCTGG 268074 >seq541 Length=321934 Score = 116 bits (128), Expect = 5e-21 Identities = 127/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 ||||||||||||| ||||| || || |||||| ||| | || || || |||||||| | Sbjct 158005 TCCATCCGTAAAAGTGCATGCTGGTGAGTTTGCCGTAGTTTGGCTCAGCGATGTGAATGT 158064 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| || ||||| ||||||||| ||| || | ||||| ||||| || | || || | Sbjct 158065 TCAGAGATTGACTCTGATCGATGTAGGTGCCACGATCTGCTGCCATCTTCAGGACGGTTT 158124 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 71036 | || | |||||||||| |||||||| | |||| | ||||||||| Sbjct 158125 TCTGGGAGATTTCCCAAACTGTTTTATAGAGCTGCTTCAGATCTTCTGG 158173 >seq768 Length=308456 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| |||| ||| || | |||||| || || || || ||||| ||||| | ||| | Sbjct 127963 CCTCGTCTCGACTGATGAGCTCGTTGCTGAAGGTCAGGCCAGGCATCAGGCCTCTCTTCT 127904 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | || || || ||||| ||||||||||| || || || || |||| Sbjct 127903 TCAGCCAGAAGATGGCGGCGAACGAACCAGAGAAGAAGATTCCCTCCACGGCAGCGAAGG 127844 Query 42207 CAATAAGTCTCTCTCC 42222 | | | ||||||||| Sbjct 127843 CCACCACTCTCTCTCC 127828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670987312809800