Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq768 105 1e-17 seq406 105 1e-17 >seq768 Length=308456 Score = 105 bits (116), Expect = 1e-17 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 || ||| ||||||| ||||| ||||| ||||| |||||||| || ||| || || ||| Sbjct 127831 GAGAGAGTGGTGGCCTTCGCTGCCGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCGCC 127890 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATA 125540 ||||| ||||| |||||| | || || ||||| || ||||| ||| |||||| | || Sbjct 127891 ATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCTGGCCTGACCTTCAGCAACGAGCTCATC 127950 Query 125541 TCTCGAGACGAGG 125553 ||||||||||| Sbjct 127951 AGTCGAGACGAGG 127963 >seq406 Length=364117 Score = 105 bits (116), Expect = 1e-17 Identities = 363/562 (65%), Gaps = 22/562 (4%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||||||| ||| || | || || ||||| ||| | ||||| | | | || Sbjct 266771 ACCAACGGCAACTCCAACGGATTGGTCCCGATGCTGAGAGTTTACAACAACACGGCTCGC 266830 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| ||||||||||| || | || || || | ||| | ||| ||||||| ||| Sbjct 266831 TACGTCGACCAGGGCGGCAACAAGAGACCCGGGGCCTTTGCCATGTACCTGGAACCGTGG 266890 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||| ||||| || ||||| | ||| || || ||| | || || ||| || Sbjct 266891 CACTTCGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAGGAGCAGAGA 266950 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT------C 97040 ||||| ||| | || || || | ||| | || || ||||||||||| | || | Sbjct 266951 GCCAGAGACCTTTTCTACGCCTTGTGGATCCCGGACCTGTTCATGAAGAGAGTGGAAAGC 267010 Query 97041 AACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGC 97100 ||| | | ||||| | | ||||| ||| | || || || ||| ||| ||| Sbjct 267011 AACCAGG------ACTGGTCCTTGATGTGTCCCAGCGAGTGTCCTGGGCTGGACGAGTGC 267064 Query 97101 TGGGGCGAAGAGTTTGAGGCCAAG---TACACGGCCTACGAGCAAG-AGGGCCGAT-ACG 97155 ||||| || ||||| ||| ||| ||||| || ||| | | |||| | | | | Sbjct 267065 TGGGGAGAGGAGTTCGAG---AAGCTCTACACCAGATATGAGAAGGAAGGGAGGGTGAAG 267121 Query 97156 TGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTG 97215 | | | | | ||| || || ||| | |||||| | | | ||| || || | Sbjct 267122 AGGGTGGTGAAGGCGCAGCAG--CTCTGGTACGCCATCATCGAGTCCCAGACCGAAACCG 267179 Query 97216 GAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGG 97275 | || || ||||| ||||||||||| | || | || |||||||| | || ||| Sbjct 267180 GGACGCCCTACATGCTCTACAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGAACCTGG 267239 Query 97276 GCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGA 97335 |||||||||| || ||| || ||||| || | || |||||| || ||||||| Sbjct 267240 GCACCATCAAATGCAGCAACCTCTGCACAGAGGTGGTGGAGTACACCAGCAAGGACGAGG 267299 Query 97336 CGGCAGTTTGCGTTCTGGCATC 97357 ||| || ||| ||||| || Sbjct 267300 TGGCCGTCTGCAACCTGGCCTC 267321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740891489039800