Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq157 118 7e-22 >seq157 Length=512728 Score = 118 bits (130), Expect = 7e-22 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||||||| |||||||||| || || | |||||| ||||| || ||||| ||||| || || Sbjct 347327 CATGTCCTTGTACTCTGCACCAAAGTGCCTCCATTGGAAACCATACACAGGTCCCAGATC 347268 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 || || ||||| | |||||| || |||| ||||| | ||| || ||||| || Sbjct 347267 CCCCTCCTCCCTCTCTGTGAAGCCCAGGTTGTCCAGGAAGTCACGGGACCCGTTGGCATC 347208 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 ||||||||| || || ||||| || ||||| |||| ||||| || || Sbjct 347207 CCAGATCTTCACTCCTTTCTCTGACAGCTCCTTGGCATTTGTTGATCC 347160 Score = 104 bits (114), Expect = 2e-17 Identities = 121/162 (75%), Gaps = 1/162 (1%) Strand=Plus/Minus Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550 || || |||| || || |||||||| ||||| || ||||||||||||||| || || Sbjct 348227 AGTCCCGTAATGTGTGCAATCATGTAGGTGAGAAGTGCGTAGCTGGCGATGTTGAAAGGC 348168 Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCT 25610 || || | ||||||| | | || | |||||| |||||||| || ||||| |||||| Sbjct 348167 ACGCCCAGACCCATGT-CGGCGGAGCGCTGGTACAGCTGACAAGACAGCTCCCCGTCGCA 348109 Query 25611 CACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTAT 25652 ||||| |||||||| | || || ||| || || || || || Sbjct 348108 GACGTAGAACTGACAGAGGGCGTGGCAGGGGGGCAGCGCCAT 348067 Score = 82.4 bits (90), Expect = 5e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 25422 TTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCT 25481 ||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||| || Sbjct 348377 TTCAGAGGTTCGATGTGATTGAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAAGTCA 348318 Query 25482 CCCGG 25486 || || Sbjct 348317 CCGGG 348313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340062547044165