Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq2560 87.8 9e-13 seq3926 84.2 1e-11 seq2382 84.2 1e-11 seq754 84.2 1e-11 seq4410 82.4 4e-11 seq353 82.4 4e-11 seq318 82.4 4e-11 seq143 82.4 4e-11 >seq2560 Length=140597 Score = 87.8 bits (96), Expect = 9e-13 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| ||||| | ||||| | |||||||||| ||||||| ||||||||||||| || Sbjct 116193 AAAAGATCAAGT-GGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCAC 116135 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGT-CGACG 11536 ||||| |||||||||||||| |||| | ||||| Sbjct 116134 GCTCTAACCAACTGAGCTAACCGGCCATGCGACG 116101 >seq3926 Length=33812 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 29361 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 29302 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 29301 CTGAGCTAACCGGCC 29287 >seq2382 Length=91242 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 3073 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 3132 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 3133 CTGAGCTAACCGGCC 3147 >seq754 Length=273385 Score = 84.2 bits (92), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||| |||| |||||| | |||||||||| ||||||| ||||||||||||| | Sbjct 174230 AAAAAGAAAATACTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCA 174289 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||| |||| Sbjct 174290 CGCTCTAACCAACTGAGCTAACCGGCC 174316 >seq4410 Length=24221 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 19956 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 20015 Query 11528 CC 11529 || Sbjct 20016 CC 20017 >seq353 Length=768792 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 15279 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 15220 Query 11528 CC 11529 || Sbjct 15219 CC 15218 >seq318 Length=399903 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 26904 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 26963 Query 11528 CC 11529 || Sbjct 26964 CC 26965 >seq143 Length=528826 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 344122 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 344181 Query 11528 CC 11529 || Sbjct 344182 CC 344183 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261433500740980