Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq102 159 5e-34 seq1324 113 6e-20 seq644 107 3e-18 >seq102 Length=683427 Score = 159 bits (176), Expect = 5e-34 Identities = 177/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 |||||||| |||| || || || || ||||||||||| |||||||| | || ||| Sbjct 618389 TTGACGATGTCAAAGCCGACTGAGCCTCCAAAGGTGCTGGGCTTCCAGTACTCTGGCGAG 618330 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 || ||| ||| |||| |||||||||||||| || |||||||||| ||| | || || Sbjct 618329 CAAATGGGATTCCCCATCAGGCCTTTGAGGGAGAAAGGAGCCCCCATCTCCACCATCGTC 618270 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920 || || || |||||||| || |||||||| ||||| | | |||| ||| | ||||||| Sbjct 618269 TCCCCAAAAATGGCGTTTGGCCGGGGCTTCTCCACGAGCAGGCCGGGGTAGAGCTCCACA 618210 Query 8921 GCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 || |||| ||| ||||| || | ||| ||| || ||||| || |||||||| Sbjct 618209 GCGTCGACGTCACCGTACAGCTCTTCCAGTATGGCGGCCATTTCTTTGTCTCCTGT 618154 Score = 127 bits (140), Expect = 3e-24 Identities = 183/256 (71%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || |||| |||||| |||| |||||||| ||| ||||||| ||| ||||| || Sbjct 616837 TCACCAATAAGGATGAGCCGAGAAGTCTGAAAGAGTCTTTCGTCATCCCAGTCTGGGTGA 616778 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || |||| ||| || ||||| | |||||| || | ||||||||| || ||||||||| Sbjct 616777 ACTTCCTTCAAAACGTCACACACCCGGTTGTGCTCACGGAGCCAGATGGTGGCGTACATC 616718 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 ||||| || || ||||| || || ||||| || || ||||| | ||| | || || Sbjct 616717 ATGAGGCCTGGGACCAGACCGAACGCCTCGTGGCCAACAGCGAAGCGCTGAGAGTCTGGG 616658 Query 9790 ACTTCGGGAGGATAGATCATGT--GCACCTGGACATCTTTGACCGAGGGGGGATACATTT 9847 || | || || ||| ||| | ||||| ||||| || ||| || || |||| | Sbjct 616657 ACGTGTGGCGGGTAGTGCATTTCAGCACC--AACATCCTTAACCAGCGGAGGGTACACCT 616600 Query 9848 CACCGTCAATAATCTG 9863 | |||| | |||||| Sbjct 616599 CTCCGTTTACAATCTG 616584 Score = 96.9 bits (106), Expect = 5e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 10284 AAGTCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTT 10343 || |||||| ||| || | ||| ||||| || || ||||| ||||| || | Sbjct 615877 AACTCACCTACGACTCCCATAGGGGTTGGGCAGTCCGCCGGAACTGGAGGAAGGGCACGA 615818 Query 10344 GCGTAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAG 10403 | ||| ||||| || ||||| | |||||||||||| |||| | |||||||||||||| Sbjct 615817 GTGTAGTAGGATAGGTTGGAATAGGCTTCCCAGCTTTTGTATCCATAGTCCGCGTTGTAA 615758 Query 10404 ATGGGAGGGCTGTCAATCAAATCGGATC 10431 | ||||| |||||||||| || ||||| Sbjct 615757 GTAGGAGGACTGTCAATCATATGGGATC 615730 >seq1324 Length=178734 Score = 113 bits (124), Expect = 6e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 || ||||| | || || || | || ||||| |||||||| |||||||| | |||||| Sbjct 71693 TTCACGATGTCGAAGCCGACCTTGCCTCCGAATGTGCTGGGCTTCCAGTATTCTGGGGAG 71634 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 || ||| ||| ||| |||||||||||||||||| ||||| |||| || | ||||| Sbjct 71633 CATATGGGGTTACCCAGGAGGCCTTTGAGGGAAAAGGGAGCGCCCATTTCCACCATGCTT 71574 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920 || ||||| || | || || | ||| |||| || || |||| ||| || || | | Sbjct 71573 TCTCCGAATATCGTCCCTGGTCGAGTCTTCTCCAGCAGTAACCCGGGGTAAAATTCAAGA 71514 Query 8921 GCCTCGATGTCTCCGTA 8937 || ||||| || || || Sbjct 71513 GCGTCGATATCCCCATA 71497 >seq644 Length=298419 Score = 107 bits (118), Expect = 3e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 8762 TCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGG 8821 || || |||||||||||||| |||||||| | || ||| |||| ||| | | ||| Sbjct 213489 TCGCCTCCGAAGGTGCTGGGCTTCCAGTACTCTGGAGAGTTGATGGGATTCCCAAGCAGG 213548 Query 8822 CCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGA 8881 ||||| ||||| || || || |||| ||| | |||||||| ||||| |||| |||||| Sbjct 213549 CCTTTCAGGGAGAAAGGGGCTCCCATCTCAACCATGCTCTCTCCGAATATGGAGTTGGGG 213608 Query 8882 CGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAG 8940 || | || |||| || || || | || ||||||| || || ||||| || || || Sbjct 213609 CGAGTTTTCTCCATCATGAGGCCTGGATAAAACTCCAGGGCGTCAATGTCACCATAGAG 213667 Score = 102 bits (112), Expect = 1e-16 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 9613 CCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCT 9672 || ||||||||||||| |||||||| || || || |||||| ||| |||||||| Sbjct 220012 CCAATAATGATGAGTCTGGTGGTCTGGAAAAGCTGCTCGTCATCCCAGGTCGGATGTTCA 220071 Query 9673 CGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATG 9732 | ||||| | || ||||| | |||||| ||||| |||||||| || |||||||| || Sbjct 220072 CCCTTCAGGATGTCACACACCCGGTTGTGCTCCCTCAGCCAGATGGTGGCGTACATGGTG 220131 Query 9733 AGACCAGGCACCAGGCCAAAAGCCTCTTGACCGA 9766 || || || || || || || | || || |||| Sbjct 220132 AGGCCTGGGACAAGTCCGAACACTTCCTGTCCGA 220165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708364451981200