Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13]
18,105 sequences; 801,711,499 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq102 159 5e-34
seq1324 113 6e-20
seq644 107 3e-18
>seq102
Length=683427
Score = 159 bits (176), Expect = 5e-34
Identities = 177/236 (75%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800
|||||||| |||| || || || || ||||||||||| |||||||| | || |||
Sbjct 618389 TTGACGATGTCAAAGCCGACTGAGCCTCCAAAGGTGCTGGGCTTCCAGTACTCTGGCGAG 618330
Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860
|| ||| ||| |||| |||||||||||||| || |||||||||| ||| | || ||
Sbjct 618329 CAAATGGGATTCCCCATCAGGCCTTTGAGGGAGAAAGGAGCCCCCATCTCCACCATCGTC 618270
Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920
|| || || |||||||| || |||||||| ||||| | | |||| ||| | |||||||
Sbjct 618269 TCCCCAAAAATGGCGTTTGGCCGGGGCTTCTCCACGAGCAGGCCGGGGTAGAGCTCCACA 618210
Query 8921 GCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976
|| |||| ||| ||||| || | ||| ||| || ||||| || ||||||||
Sbjct 618209 GCGTCGACGTCACCGTACAGCTCTTCCAGTATGGCGGCCATTTCTTTGTCTCCTGT 618154
Score = 127 bits (140), Expect = 3e-24
Identities = 183/256 (71%), Gaps = 4/256 (2%)
Strand=Plus/Minus
Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669
|| || |||| |||||| |||| |||||||| ||| ||||||| ||| ||||| ||
Sbjct 616837 TCACCAATAAGGATGAGCCGAGAAGTCTGAAAGAGTCTTTCGTCATCCCAGTCTGGGTGA 616778
Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729
|| |||| ||| || ||||| | |||||| || | ||||||||| || |||||||||
Sbjct 616777 ACTTCCTTCAAAACGTCACACACCCGGTTGTGCTCACGGAGCCAGATGGTGGCGTACATC 616718
Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789
||||| || || ||||| || || ||||| || || ||||| | ||| | || ||
Sbjct 616717 ATGAGGCCTGGGACCAGACCGAACGCCTCGTGGCCAACAGCGAAGCGCTGAGAGTCTGGG 616658
Query 9790 ACTTCGGGAGGATAGATCATGT--GCACCTGGACATCTTTGACCGAGGGGGGATACATTT 9847
|| | || || ||| ||| | ||||| ||||| || ||| || || |||| |
Sbjct 616657 ACGTGTGGCGGGTAGTGCATTTCAGCACC--AACATCCTTAACCAGCGGAGGGTACACCT 616600
Query 9848 CACCGTCAATAATCTG 9863
| |||| | ||||||
Sbjct 616599 CTCCGTTTACAATCTG 616584
Score = 96.9 bits (106), Expect = 5e-15
Identities = 110/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 10284 AAGTCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTT 10343
|| |||||| ||| || | ||| ||||| || || ||||| ||||| || |
Sbjct 615877 AACTCACCTACGACTCCCATAGGGGTTGGGCAGTCCGCCGGAACTGGAGGAAGGGCACGA 615818
Query 10344 GCGTAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAG 10403
| ||| ||||| || ||||| | |||||||||||| |||| | ||||||||||||||
Sbjct 615817 GTGTAGTAGGATAGGTTGGAATAGGCTTCCCAGCTTTTGTATCCATAGTCCGCGTTGTAA 615758
Query 10404 ATGGGAGGGCTGTCAATCAAATCGGATC 10431
| ||||| |||||||||| || |||||
Sbjct 615757 GTAGGAGGACTGTCAATCATATGGGATC 615730
>seq1324
Length=178734
Score = 113 bits (124), Expect = 6e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800
|| ||||| | || || || | || ||||| |||||||| |||||||| | ||||||
Sbjct 71693 TTCACGATGTCGAAGCCGACCTTGCCTCCGAATGTGCTGGGCTTCCAGTATTCTGGGGAG 71634
Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860
|| ||| ||| ||| |||||||||||||||||| ||||| |||| || | |||||
Sbjct 71633 CATATGGGGTTACCCAGGAGGCCTTTGAGGGAAAAGGGAGCGCCCATTTCCACCATGCTT 71574
Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920
|| ||||| || | || || | ||| |||| || || |||| ||| || || | |
Sbjct 71573 TCTCCGAATATCGTCCCTGGTCGAGTCTTCTCCAGCAGTAACCCGGGGTAAAATTCAAGA 71514
Query 8921 GCCTCGATGTCTCCGTA 8937
|| ||||| || || ||
Sbjct 71513 GCGTCGATATCCCCATA 71497
>seq644
Length=298419
Score = 107 bits (118), Expect = 3e-18
Identities = 131/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 8762 TCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGG 8821
|| || |||||||||||||| |||||||| | || ||| |||| ||| | | |||
Sbjct 213489 TCGCCTCCGAAGGTGCTGGGCTTCCAGTACTCTGGAGAGTTGATGGGATTCCCAAGCAGG 213548
Query 8822 CCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGA 8881
||||| ||||| || || || |||| ||| | |||||||| ||||| |||| ||||||
Sbjct 213549 CCTTTCAGGGAGAAAGGGGCTCCCATCTCAACCATGCTCTCTCCGAATATGGAGTTGGGG 213608
Query 8882 CGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAG 8940
|| | || |||| || || || | || ||||||| || || ||||| || || ||
Sbjct 213609 CGAGTTTTCTCCATCATGAGGCCTGGATAAAACTCCAGGGCGTCAATGTCACCATAGAG 213667
Score = 102 bits (112), Expect = 1e-16
Identities = 115/154 (75%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 9613 CCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCT 9672
|| ||||||||||||| |||||||| || || || |||||| ||| ||||||||
Sbjct 220012 CCAATAATGATGAGTCTGGTGGTCTGGAAAAGCTGCTCGTCATCCCAGGTCGGATGTTCA 220071
Query 9673 CGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATG 9732
| ||||| | || ||||| | |||||| ||||| |||||||| || |||||||| ||
Sbjct 220072 CCCTTCAGGATGTCACACACCCGGTTGTGCTCCCTCAGCCAGATGGTGGCGTACATGGTG 220131
Query 9733 AGACCAGGCACCAGGCCAAAAGCCTCTTGACCGA 9766
|| || || || || || || | || || ||||
Sbjct 220132 AGGCCTGGGACAAGTCCGAACACTTCCTGTCCGA 220165
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708364451981200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |