Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13]
18,105 sequences; 801,711,499 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq619 132 4e-26
seq1594 107 2e-18
>seq619
Length=304156
Score = 132 bits (146), Expect = 4e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839
|||||| |||| || | ||||| ||| | || || ||||| || | ||| || ||
Sbjct 191817 TCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 191758
Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899
|| ||| | ||| ||||||||||| || ||||||| | ||| ||||| || |||||
Sbjct 191757 CAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGG 191698
Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959
||| |||||||| || | ||| |||||||| ||| | | |||||| | | || ||
Sbjct 191697 AATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCAC 191638
Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | || ||||| || ||||| ||||||||||| || ||||||||
Sbjct 191637 CTCCAGGGTAATGGTCTTCCCAGTGAGAGTTTTCACGAAAATCTGCAT 191590
>seq1594
Length=294527
Score = 107 bits (118), Expect = 2e-18
Identities = 166/237 (70%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832
||||| || || |||| || | || | ||| | |||||||| || || | ||| |
Sbjct 183796 TTTACTGGCCACCCCTCAGACGGAGAACAAGGTGGAGGGTAGATTCTTTCTGGATGTTGT 183855
Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892
||||| || |||| | |||||||||||| || ||| ||||||| | || ||||| |
Sbjct 183856 AATCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGT 183915
Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952
| || || || || || || || | ||||| |||||||| | | |||||| |
Sbjct 183916 CAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGG 183975
Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
| || || || | |||||||| || || || || || || || |||||||||||||
Sbjct 183976 GCTCAACTTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGC 184032
Score = 104 bits (114), Expect = 2e-17
Identities = 155/219 (71%), Gaps = 1/219 (0%)
Strand=Plus/Plus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|||| ||| | || ||||| || || | ||| || || || ||| | ||| |||
Sbjct 188242 ACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 188301
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
||||| |||||| ||||||| | || ||||| || || || || || || || || |
Sbjct 188302 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 188361
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| || ||||| || | | |||||| | | || || |||| |||||||||||
Sbjct 188362 ATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTG 188421
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGCTTACAACA 95017
|| || || |||||||||||||||||||| ||| || ||
Sbjct 188422 CCGGTGAGGGTTTTCACAAAGATCTGCAT-CTTGCACCA 188459
Score = 102 bits (112), Expect = 7e-17
Identities = 173/250 (69%), Gaps = 2/250 (1%)
Strand=Plus/Plus
Query 94762 TTTTTTAAAAT--TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCC 94819
||||||| ||| ||||| || || |||| || | || | ||| | || || |||
Sbjct 187975 TTTTTTAGAATCATTTACTGGCCACCCCTCAGACGGAGAACAAGGTGGAGGGTGGACTCC 188034
Query 94820 TTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATT 94879
|| || | ||| || || | ||| | ||| |||||||| |||||| |||||||
Sbjct 188035 TTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATC 188094
Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939
| || ||||| || || || || || || || || | ||||| ||||||||| |
Sbjct 188095 AGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTCTCA 188154
Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999
| |||||| | | || || || | ||||||||||| || || || || || || |||
Sbjct 188155 ATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACGAAG 188214
Query 95000 ATCTGCATGC 95009
||||||||||
Sbjct 188215 ATCTGCATGC 188224
Score = 93.3 bits (102), Expect = 4e-14
Identities = 141/201 (70%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870
|| ||||| ||||| | || || || || ||| | ||| |||||||| ||||||
Sbjct 184290 GTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 184349
Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930
||||||| | || ||||| || || || || || || || || | ||||| || |||
Sbjct 184350 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCTTTG 184409
Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990
||| | | ||||| | | || || || | ||||||||||| || || || ||
Sbjct 184410 ACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTC 184469
Query 94991 TTCACAAAGATCTGCATGCTT 95011
|| ||||||||||||||| ||
Sbjct 184470 TTGACAAAGATCTGCATGTTT 184490
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448189746097800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |