Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13]
18,105 sequences; 801,711,499 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq2420 183 5e-42
seq1622 183 5e-42
seq756 179 6e-41
seq5345 172 9e-39
seq6404 168 1e-37
seq3730 163 4e-36
seq3359 163 4e-36
seq6852 150 3e-32
seq4040 141 1e-29
>seq2420
Length=89377
Score = 183 bits (202), Expect = 5e-42
Identities = 207/276 (75%), Gaps = 1/276 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| |||||||| || | | || || ||||||||||| |||||||||||||| |||||
Sbjct 12954 CGCCAAGCGTCACCGTAAAGTCCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 12895
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||||| |||||||| || ||||||||||||||| |||| || | |||| || ||||
Sbjct 12894 TCGTCGCCTGGCTCGCCGCGGTGGAGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 12835
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | ||| | ||| ||||||| ||| |||||||| |||||| || |||||||||
Sbjct 12834 CCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTTATCCGTGATGCCGTCACCTATACCGA 12775
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | ||||| || ||| |||||||| | || || || | || | || ||
Sbjct 12774 GCACGCCAAGAGGAAGACCGTGACCGCCATGGATGTGGTGTACGCTCTCAAGAGGCAGGG 12715
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTT-AATCTTCTA 16706
||| | | || || || || ||| ||||| |||
Sbjct 12714 CCGCACTCTGTACGGCTTCGGCGGTTAAATCTACTA 12679
Score = 159 bits (176), Expect = 5e-35
Identities = 181/243 (74%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| |||||||| || | | || || ||||||||||| |||||||||||||| |||||
Sbjct 19038 CGCCAAGCGTCACCGTAAAGTCCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 18979
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||||| |||||||| || ||||||||||||||| |||| || | |||| || ||||
Sbjct 18978 TCGTCGCCTGGCTCGCCGCGGTGGAGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 18919
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | ||| | ||| | ||||| ||| ||| |||| |||||| || ||| || ||
Sbjct 18918 CCGCGGTGTGCTCAAGGTTTTCCTGGAGAACGTCATCCGTGATGCCGTCACCTACACAGA 18859
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | ||||| || ||| | |||||| | || || || | || | || ||
Sbjct 18858 GCACGCCAAGAGGAAGACCGTGACCGCTATGGATGTGGTGTACGCTCTCAAGAGGCAGGG 18799
Query 16672 CCG 16674
|||
Sbjct 18798 CCG 18796
>seq1622
Length=147380
Score = 183 bits (202), Expect = 5e-42
Identities = 205/274 (75%), Gaps = 0/274 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||||||||| || | | ||| || ||||||||||| |||||||||||||| |||||
Sbjct 142813 CGCTAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 142754
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| ||||||||||| || || |||||||||||| |||| || | |||| || ||||
Sbjct 142753 CCGCCGTCTGGCTCGCCGCGGGGGAGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 142694
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | ||| | ||| ||||||| ||| ||| |||| ||| || || ||| |||||
Sbjct 142693 CCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGTGACGCCGTCACCTACACCGA 142634
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | ||||| |||||| ||||||| | || || || | || | || ||
Sbjct 142633 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTGGTGTACGCTCTCAAGAGGCAGGG 142574
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705
||| | | || || || ||| ||||| || ||
Sbjct 142573 CCGCACTCTGTACGGCTTCGGAGGTTAAACTGCT 142540
Score = 174 bits (192), Expect = 2e-39
Identities = 203/274 (74%), Gaps = 0/274 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| |||||||| || | ||| || ||||||||||| |||||||||||||| |||||
Sbjct 133256 CGCCAAGCGTCACCGTAAGGTTCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 133315
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| ||||||||||| || || |||||||||||| |||| || | |||| || ||||
Sbjct 133316 CCGCCGTCTGGCTCGCCGCGGGGGAGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 133375
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | ||| | ||| ||||||| ||| ||| |||| ||| || || ||| |||||
Sbjct 133376 CCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGTGACGCCGTCACCTACACCGA 133435
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | ||||| |||||| ||||||| | || || || | || | || ||
Sbjct 133436 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTGGTGTACGCTCTCAAGAGGCAGGG 133495
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705
||| | | || || || ||| ||||| || ||
Sbjct 133496 CCGCACTCTGTACGGCTTCGGAGGTTAAACTGCT 133529
>seq756
Length=278594
Score = 179 bits (198), Expect = 6e-41
Identities = 204/274 (74%), Gaps = 0/274 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| |||||||| || | ||| || ||||||||||| |||||||||||||| |||||
Sbjct 22416 CGCCAAGCGTCACCGTAAGGTTCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 22357
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| |||||||||||||| || |||||||||||| |||| || | |||| || ||||
Sbjct 22356 CCGCCGTCTGGCTCGTCGCGGGGGAGTCAAGCGTATCTCCGGCCTCATCTACGAGGAGAC 22297
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | ||| | ||| ||||||| ||| ||| |||| ||| || || ||| |||||
Sbjct 22296 CCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGTGACGCCGTCACCTACACCGA 22237
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | ||||| |||||| ||||||| | || || || | || | || ||
Sbjct 22236 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTGGTGTACGCTCTCAAGAGGCAGGG 22177
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705
||| | | || || || ||| ||||| || ||
Sbjct 22176 CCGCACTCTGTACGGCTTCGGAGGTTAAACTGCT 22143
>seq5345
Length=11567
Score = 172 bits (190), Expect = 9e-39
Identities = 199/268 (74%), Gaps = 0/268 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| |||||||| || | ||| || ||||||||||| |||||||||||||| |||||
Sbjct 6416 CGCCAAGCGTCACCGTAAGGTTCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 6475
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| ||||||||||| || || |||||||||||| |||| || | |||| || ||||
Sbjct 6476 CCGCCGTCTGGCTCGCCGCGGGGGAGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 6535
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | ||| | ||| ||||||| ||| ||| |||| ||| || || ||| |||||
Sbjct 6536 CCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGTGACGCCGTCACCTACACCGA 6595
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | ||||| |||||| ||||||| | || || || | || | || ||
Sbjct 6596 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTGGTGTACGCTCTCAAGAGGCAGGG 6655
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
||| | | || || || ||| |||||
Sbjct 6656 CCGCACTCTGTACGGCTTCGGAGGTTAA 6683
>seq6404
Length=6614
Score = 168 bits (186), Expect = 1e-37
Identities = 198/268 (74%), Gaps = 0/268 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| |||||||| || | ||| || ||||||||||| |||||||||||||| || ||
Sbjct 4956 CGCCAAGCGTCACCGTAAGGTTCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCGAT 4897
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| ||||||||||| || || |||||||||||| |||| || | |||| || ||||
Sbjct 4896 CCGCCGTCTGGCTCGCCGCGGGGGAGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 4837
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | ||| | ||| ||||||| ||| ||| |||| ||| || || ||| |||||
Sbjct 4836 CCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGTGACGCCGTCACCTACACCGA 4777
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | ||||| |||||| ||||||| | || || || | || | || ||
Sbjct 4776 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTGGTGTACGCTCTCAAGAGGCAGGG 4717
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
||| | | || || || ||| |||||
Sbjct 4716 CCGCACTCTGTACGGCTTCGGAGGTTAA 4689
>seq3730
Length=69089
Score = 163 bits (180), Expect = 4e-36
Identities = 197/268 (74%), Gaps = 0/268 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || || | | || || ||||||||||| |||||||||||||| || ||
Sbjct 43884 CGCCAAGCGCCACCGTAAAGTCCTCCGTGATAACATCCAGGGAATCACCAAGCCGGCCAT 43825
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| ||||||||||| || || ||||||||||| |||| || | |||| || ||||
Sbjct 43824 CCGCCGTCTGGCTCGCCGCGGCGGAGTCAAGCGAATCTCCGGCCTCATCTACGAGGAGAC 43765
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | ||| |||||| | ||||| ||| ||| |||| ||| || | || |||||
Sbjct 43764 CCGCGGTGTGTTGAAGGTGTTCCTGGAGAACGTGATCCGTGACGCCGTTACGTACACCGA 43705
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | ||||| |||||| |||||||| | || || || |||| | || ||
Sbjct 43704 GCACGCCAAGAGGAAGACCGTCACCGCCATGGATGTGGTGTACGCTCTGAAGAGGCAGGG 43645
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
||| | | || || || ||| |||||
Sbjct 43644 CCGCACTCTGTACGGCTTCGGAGGTTAA 43617
Score = 163 bits (180), Expect = 4e-36
Identities = 197/268 (74%), Gaps = 0/268 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || || | | || || ||||||||||| |||||||||||||| || ||
Sbjct 48443 CGCCAAGCGCCACCGTAAAGTCCTCCGTGATAACATCCAGGGAATCACCAAGCCGGCCAT 48384
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| ||||||||||| || || ||||||||||| |||| || | |||| || ||||
Sbjct 48383 CCGCCGTCTGGCTCGCCGCGGCGGAGTCAAGCGAATCTCCGGCCTCATCTACGAGGAGAC 48324
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | ||| |||||| | ||||| ||| ||| |||| ||| || | || |||||
Sbjct 48323 CCGCGGTGTGTTGAAGGTGTTCCTGGAGAACGTGATCCGTGACGCCGTTACGTACACCGA 48264
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | ||||| |||||| |||||||| | || || || |||| | || ||
Sbjct 48263 GCACGCCAAGAGGAAGACCGTCACCGCCATGGATGTGGTGTACGCTCTGAAGAGGCAGGG 48204
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
||| | | || || || ||| |||||
Sbjct 48203 CCGCACTCTGTACGGCTTCGGAGGTTAA 48176
>seq3359
Length=48252
Score = 163 bits (180), Expect = 4e-36
Identities = 182/243 (75%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| |||||||| || | | || || ||||||||||| |||||||||||||| |||||
Sbjct 7424 CGCCAAGCGTCACCGTAAAGTCCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 7365
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||||| |||||||| || |||||||||||||| |||| || | |||| || ||||
Sbjct 7364 TCGTCGCCTGGCTCGCCGCGGTGGAGTCAAGCGCATCTCCGGTCTCATCTACGAGGAGAC 7305
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | ||| | ||| | ||||| ||| |||||||| |||||| || ||| || ||
Sbjct 7304 CCGCGGTGTGCTCAAGGTTTTCCTGGAGAACGTTATCCGTGATGCCGTCACCTACACAGA 7245
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | ||||| || ||| |||||||| | || || || | || | || ||
Sbjct 7244 GCACGCCAAGAGGAAGACCGTGACCGCCATGGATGTAGTGTACGCTCTCAAGAGGCAGGG 7185
Query 16672 CCG 16674
|||
Sbjct 7184 CCG 7182
>seq6852
Length=3338
Score = 150 bits (166), Expect = 3e-32
Identities = 175/236 (74%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 16464 ACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGC 16523
||||||| |||||||||||||| || ||||| ||||||||||| || || ||||||||||
Sbjct 1 ACATCCAGGGAATCACCAAGCCCGCGATCCGCCGTCTGGCTCGCCGCGGGGGAGTCAAGC 60
Query 16524 GTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCG 16583
|| |||| || | |||| || |||| || | ||| | ||| ||||||| ||| ||
Sbjct 61 GTATCTCCGGTCTCATCTACGAGGAGACCCGCGGTGTGCTCAAGGTCTTCCTGGAGAACG 120
Query 16584 TTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGG 16643
| |||| ||| || || ||| ||||||||||| || | ||||| |||||| ||||||
Sbjct 121 TCATCCGTGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACCGTCACCGCCATGG 180
Query 16644 ATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
| | || || || | || | || ||||| | | || || || ||| |||||
Sbjct 181 ACGTGGTGTACGCTCTCAAGAGGCAGGGCCGCACTCTGTACGGCTTCGGAGGTTAA 236
>seq4040
Length=31112
Score = 141 bits (156), Expect = 1e-29
Identities = 177/243 (73%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || || | | ||| || ||||||||||| || ||||||||||| || ||
Sbjct 16957 CGCCAAGCGGCACCGTAAAGTTCTCCGCGATAACATCCAGGGCATCACCAAGCCCGCCAT 16898
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || |||||||| || || |||||||||||| |||| || || |||| || ||||
Sbjct 16897 CCGCCGCCTGGCTCGCCGCGGCGGAGTCAAGCGTATCTCCGGCCTGATCTACGAGGAGAC 16838
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || ||||| | ||||| ||| ||| |||| ||| || | || || ||
Sbjct 16837 CCGCGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGACGCCGTGACGTACACGGA 16778
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | ||||| || ||| ||||||| | || || || |||| | || ||
Sbjct 16777 GCACGCCAAGAGGAAGACGGTGACCGCCATGGACGTGGTGTACGCCCTGAAGAGGCAGGG 16718
Query 16672 CCG 16674
|||
Sbjct 16717 CCG 16715
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79058646471765
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