Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2420 183 5e-42 seq1622 183 5e-42 seq756 179 6e-41 seq5345 172 9e-39 seq6404 168 1e-37 seq3730 163 4e-36 seq3359 163 4e-36 seq6852 150 3e-32 seq4040 141 1e-29 >seq2420 Length=89377 Score = 183 bits (202), Expect = 5e-42 Identities = 207/276 (75%), Gaps = 1/276 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | || || ||||||||||| |||||||||||||| ||||| Sbjct 12954 CGCCAAGCGTCACCGTAAAGTCCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 12895 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| |||||||| || ||||||||||||||| |||| || | |||| || |||| Sbjct 12894 TCGTCGCCTGGCTCGCCGCGGTGGAGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 12835 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||||| ||| |||||||| |||||| || ||||||||| Sbjct 12834 CCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTTATCCGTGATGCCGTCACCTATACCGA 12775 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| |||||||| | || || || | || | || || Sbjct 12774 GCACGCCAAGAGGAAGACCGTGACCGCCATGGATGTGGTGTACGCTCTCAAGAGGCAGGG 12715 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTT-AATCTTCTA 16706 ||| | | || || || || ||| ||||| ||| Sbjct 12714 CCGCACTCTGTACGGCTTCGGCGGTTAAATCTACTA 12679 Score = 159 bits (176), Expect = 5e-35 Identities = 181/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | || || ||||||||||| |||||||||||||| ||||| Sbjct 19038 CGCCAAGCGTCACCGTAAAGTCCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 18979 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| |||||||| || ||||||||||||||| |||| || | |||| || |||| Sbjct 18978 TCGTCGCCTGGCTCGCCGCGGTGGAGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 18919 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| ||| |||| |||||| || ||| || || Sbjct 18918 CCGCGGTGTGCTCAAGGTTTTCCTGGAGAACGTCATCCGTGATGCCGTCACCTACACAGA 18859 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| | |||||| | || || || | || | || || Sbjct 18858 GCACGCCAAGAGGAAGACCGTGACCGCTATGGATGTGGTGTACGCTCTCAAGAGGCAGGG 18799 Query 16672 CCG 16674 ||| Sbjct 18798 CCG 18796 >seq1622 Length=147380 Score = 183 bits (202), Expect = 5e-42 Identities = 205/274 (75%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | ||| || ||||||||||| |||||||||||||| ||||| Sbjct 142813 CGCTAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 142754 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || |||||||||||| |||| || | |||| || |||| Sbjct 142753 CCGCCGTCTGGCTCGCCGCGGGGGAGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 142694 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 142693 CCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGTGACGCCGTCACCTACACCGA 142634 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| | || || || | || | || || Sbjct 142633 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTGGTGTACGCTCTCAAGAGGCAGGG 142574 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 ||| | | || || || ||| ||||| || || Sbjct 142573 CCGCACTCTGTACGGCTTCGGAGGTTAAACTGCT 142540 Score = 174 bits (192), Expect = 2e-39 Identities = 203/274 (74%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | ||| || ||||||||||| |||||||||||||| ||||| Sbjct 133256 CGCCAAGCGTCACCGTAAGGTTCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 133315 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || |||||||||||| |||| || | |||| || |||| Sbjct 133316 CCGCCGTCTGGCTCGCCGCGGGGGAGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 133375 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 133376 CCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGTGACGCCGTCACCTACACCGA 133435 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| | || || || | || | || || Sbjct 133436 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTGGTGTACGCTCTCAAGAGGCAGGG 133495 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 ||| | | || || || ||| ||||| || || Sbjct 133496 CCGCACTCTGTACGGCTTCGGAGGTTAAACTGCT 133529 >seq756 Length=278594 Score = 179 bits (198), Expect = 6e-41 Identities = 204/274 (74%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | ||| || ||||||||||| |||||||||||||| ||||| Sbjct 22416 CGCCAAGCGTCACCGTAAGGTTCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 22357 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||||||||| || |||||||||||| |||| || | |||| || |||| Sbjct 22356 CCGCCGTCTGGCTCGTCGCGGGGGAGTCAAGCGTATCTCCGGCCTCATCTACGAGGAGAC 22297 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 22296 CCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGTGACGCCGTCACCTACACCGA 22237 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| | || || || | || | || || Sbjct 22236 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTGGTGTACGCTCTCAAGAGGCAGGG 22177 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 ||| | | || || || ||| ||||| || || Sbjct 22176 CCGCACTCTGTACGGCTTCGGAGGTTAAACTGCT 22143 >seq5345 Length=11567 Score = 172 bits (190), Expect = 9e-39 Identities = 199/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | ||| || ||||||||||| |||||||||||||| ||||| Sbjct 6416 CGCCAAGCGTCACCGTAAGGTTCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 6475 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || |||||||||||| |||| || | |||| || |||| Sbjct 6476 CCGCCGTCTGGCTCGCCGCGGGGGAGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 6535 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 6536 CCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGTGACGCCGTCACCTACACCGA 6595 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| | || || || | || | || || Sbjct 6596 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTGGTGTACGCTCTCAAGAGGCAGGG 6655 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || || ||| ||||| Sbjct 6656 CCGCACTCTGTACGGCTTCGGAGGTTAA 6683 >seq6404 Length=6614 Score = 168 bits (186), Expect = 1e-37 Identities = 198/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | ||| || ||||||||||| |||||||||||||| || || Sbjct 4956 CGCCAAGCGTCACCGTAAGGTTCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCGAT 4897 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || |||||||||||| |||| || | |||| || |||| Sbjct 4896 CCGCCGTCTGGCTCGCCGCGGGGGAGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 4837 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 4836 CCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGTGACGCCGTCACCTACACCGA 4777 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| | || || || | || | || || Sbjct 4776 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTGGTGTACGCTCTCAAGAGGCAGGG 4717 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || || ||| ||||| Sbjct 4716 CCGCACTCTGTACGGCTTCGGAGGTTAA 4689 >seq3730 Length=69089 Score = 163 bits (180), Expect = 4e-36 Identities = 197/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | || || ||||||||||| |||||||||||||| || || Sbjct 43884 CGCCAAGCGCCACCGTAAAGTCCTCCGTGATAACATCCAGGGAATCACCAAGCCGGCCAT 43825 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || ||||||||||| |||| || | |||| || |||| Sbjct 43824 CCGCCGTCTGGCTCGCCGCGGCGGAGTCAAGCGAATCTCCGGCCTCATCTACGAGGAGAC 43765 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| |||||| | ||||| ||| ||| |||| ||| || | || ||||| Sbjct 43764 CCGCGGTGTGTTGAAGGTGTTCCTGGAGAACGTGATCCGTGACGCCGTTACGTACACCGA 43705 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| |||||||| | || || || |||| | || || Sbjct 43704 GCACGCCAAGAGGAAGACCGTCACCGCCATGGATGTGGTGTACGCTCTGAAGAGGCAGGG 43645 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || || ||| ||||| Sbjct 43644 CCGCACTCTGTACGGCTTCGGAGGTTAA 43617 Score = 163 bits (180), Expect = 4e-36 Identities = 197/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | || || ||||||||||| |||||||||||||| || || Sbjct 48443 CGCCAAGCGCCACCGTAAAGTCCTCCGTGATAACATCCAGGGAATCACCAAGCCGGCCAT 48384 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || ||||||||||| |||| || | |||| || |||| Sbjct 48383 CCGCCGTCTGGCTCGCCGCGGCGGAGTCAAGCGAATCTCCGGCCTCATCTACGAGGAGAC 48324 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| |||||| | ||||| ||| ||| |||| ||| || | || ||||| Sbjct 48323 CCGCGGTGTGTTGAAGGTGTTCCTGGAGAACGTGATCCGTGACGCCGTTACGTACACCGA 48264 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| |||||||| | || || || |||| | || || Sbjct 48263 GCACGCCAAGAGGAAGACCGTCACCGCCATGGATGTGGTGTACGCTCTGAAGAGGCAGGG 48204 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || || ||| ||||| Sbjct 48203 CCGCACTCTGTACGGCTTCGGAGGTTAA 48176 >seq3359 Length=48252 Score = 163 bits (180), Expect = 4e-36 Identities = 182/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | || || ||||||||||| |||||||||||||| ||||| Sbjct 7424 CGCCAAGCGTCACCGTAAAGTCCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 7365 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| |||||||| || |||||||||||||| |||| || | |||| || |||| Sbjct 7364 TCGTCGCCTGGCTCGCCGCGGTGGAGTCAAGCGCATCTCCGGTCTCATCTACGAGGAGAC 7305 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| |||||||| |||||| || ||| || || Sbjct 7304 CCGCGGTGTGCTCAAGGTTTTCCTGGAGAACGTTATCCGTGATGCCGTCACCTACACAGA 7245 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| |||||||| | || || || | || | || || Sbjct 7244 GCACGCCAAGAGGAAGACCGTGACCGCCATGGATGTAGTGTACGCTCTCAAGAGGCAGGG 7185 Query 16672 CCG 16674 ||| Sbjct 7184 CCG 7182 >seq6852 Length=3338 Score = 150 bits (166), Expect = 3e-32 Identities = 175/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 16464 ACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGC 16523 ||||||| |||||||||||||| || ||||| ||||||||||| || || |||||||||| Sbjct 1 ACATCCAGGGAATCACCAAGCCCGCGATCCGCCGTCTGGCTCGCCGCGGGGGAGTCAAGC 60 Query 16524 GTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCG 16583 || |||| || | |||| || |||| || | ||| | ||| ||||||| ||| || Sbjct 61 GTATCTCCGGTCTCATCTACGAGGAGACCCGCGGTGTGCTCAAGGTCTTCCTGGAGAACG 120 Query 16584 TTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGG 16643 | |||| ||| || || ||| ||||||||||| || | ||||| |||||| |||||| Sbjct 121 TCATCCGTGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACCGTCACCGCCATGG 180 Query 16644 ATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || || || | || | || ||||| | | || || || ||| ||||| Sbjct 181 ACGTGGTGTACGCTCTCAAGAGGCAGGGCCGCACTCTGTACGGCTTCGGAGGTTAA 236 >seq4040 Length=31112 Score = 141 bits (156), Expect = 1e-29 Identities = 177/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | ||| || ||||||||||| || ||||||||||| || || Sbjct 16957 CGCCAAGCGGCACCGTAAAGTTCTCCGCGATAACATCCAGGGCATCACCAAGCCCGCCAT 16898 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || |||||||||||| |||| || || |||| || |||| Sbjct 16897 CCGCCGCCTGGCTCGCCGCGGCGGAGTCAAGCGTATCTCCGGCCTGATCTACGAGGAGAC 16838 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| ||| || | || || || Sbjct 16837 CCGCGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGACGCCGTGACGTACACGGA 16778 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| ||||||| | || || || |||| | || || Sbjct 16777 GCACGCCAAGAGGAAGACGGTGACCGCCATGGACGTGGTGTACGCCCTGAAGAGGCAGGG 16718 Query 16672 CCG 16674 ||| Sbjct 16717 CCG 16715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79058646471765