Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13]
18,105 sequences; 801,711,499 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq406 264 1e-65
seq541 118 1e-21
seq619 113 4e-20
seq1594 111 1e-19
>seq406
Length=364117
Score = 264 bits (292), Expect = 1e-65
Identities = 987/1514 (65%), Gaps = 54/1514 (4%)
Strand=Plus/Minus
Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117
||||||| ||| ||||| |||| || ||| | || || | ||| ||| | |
Sbjct 267891 TTGACGATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCC 267832
Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177
|| | |||||||| ||||||||||| || ||||| | || ||||||||| ||||| |
Sbjct 267831 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGC 267772
Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237
| | || | || |||||| || ||| | ||||| ||| ||| |||||
Sbjct 267771 AGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCAC 267712
Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297
|| ||||| || ||||||||||||||||| | ||||||| |||| ||| |
Sbjct 267711 AGGTCGGTCGGTGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGATGGGCGAG 267652
Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG--GCGAGCTCGCAACTCGCCTCCAGAG 145355
|| | | | ||| ||| || | || ||||| ||||| || |||||||| |
Sbjct 267651 CCCTCGTACGTCTCGTAGGGGCCG--AGCTCTGCGGCGAGTTCGCAGCTGGCCTCCAGGG 267594
Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGT 145415
|| || || || |||||| || || ||||||||||| ||||| ||| |||
Sbjct 267593 CGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGGGCTTCGGGGCTTTCGA 267534
Query 145416 ACGGCATG-CGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGC 145474
|||| ||| |||| ||| | || |||||||| || ||||| | || | ||||| |||
Sbjct 267533 ACGG-ATGTCGCATCAGGATGAAGGCATCGGCCAGACCCTGGACGCCGATCCCGATCGGC 267475
Query 145475 CGATGTTTCATGTTG-----CTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGA 145529
| || | ||||| ||| | ||| ||| | ||| | || ||| |||||
Sbjct 267474 CTGTGGCGCTTGTTGGACGTCTCGGCTTCGGGGACCGGGTAGTA-ATTGAT----GTCGA 267420
Query 145530 TAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAA 145589
| || || || | |||| ||| | |||||| || | | || ||| | ||||| |
Sbjct 267419 TGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGA 267360
Query 145590 A---CCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAA 145646
| ||| ||| ||| ||| | |||| |||||| || |||| || || |
Sbjct 267359 AAGTCCG---CTCTGGCGTGACGT-ACA--TGTTGAGGGCGATGGAGGCCAGGTTGCAGA 267306
Query 145647 CTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGA 145706
| ||| ||| || | | |||| | || | ||| | ||| | ||||| |||||||
Sbjct 267305 CGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCTGTGCAGAGGTTGCTGCATTTGA 267246
Query 145707 TGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACG 145766
|||| ||||| || ||||| || || ||||||||||| |||||||||||||||||||| |
Sbjct 267245 TGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGG 267186
Query 145767 GTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCA-AG-TCCTGCGCACGCAC 145824
| || || || ||| | ||| | ||| || || || | |||||| |||
Sbjct 267185 GCGTCCCGGTTTCGGTCTGGGACTCGATGAT--GGCGTACCAGAGCTGCTGCGCCTTCAC 267128
Query 145825 CTGCTGCTGGTAGCGGCCCT--CTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAA 145882
| | || | | |||| |||| || ||| | ||||||||| ||| ||| |
Sbjct 267127 CACCCTCT-TCACCCTCCCTTCCTTC-TCATATCTGGTGTAGAGCTTCTCGAACTCCTCT 267070
Query 145883 CCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTG 145942
|| |||| ||| ||| || ||||||| | |||||||||||| ||||| | ||||
Sbjct 267069 CCCCAGCACTCGTCCAGCCCAGGACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTG 267010
Query 145943 GCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC--GCG 146000
| || | || ||| |||| || || | ||||| ||||| | | ||| | ||
Sbjct 267009 CTTTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCT 266950
Query 146001 CTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGCGT 146060
|| ||| ||||| || |||| ||||| | || | | | ||| ||
Sbjct 266949 CTCTGC--TCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGT 266892
Query 146061 GCCACGGTTCAATATAGACGGCGAGGGCTCC--TTTTCGT-TTGCCACCCTGGTCCACGT 146117
|||||||||| | || | ||| | ||| || | || | ||||| |||||||| ||||
Sbjct 266891 GCCACGGTTCCAGGTACATGGCAAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGT 266832
Query 146118 GACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCG 146177
|| || ||||||| | || | || ||| || | | ||| ||| |||||| |
Sbjct 266831 AGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGG 266772
Query 146178 TAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGC 146237
| | || | | || || || | ||| || |||||||| || ||
Sbjct 266771 TGCCGGCAATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCCCCAG 266712
Query 146238 CGTACTTGGATAT-AGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG 146296
|| ||||||| || ||| ||||| | || || ||||||||||| || ||||| |||
Sbjct 266711 CGGACTTGGAAATGAGC-GCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCG 266653
Query 146297 --CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGG--CGTCCCCGCCGA 146352
|||| ||| | ||||| ||||| | ||| ||||| | ||| ||||| ||
Sbjct 266652 TCCTTC--ATGGCAAGCAGGAAGCAGCTGGACAGCTGCGGC--CGGTTGGTCCCGGCGTT 266597
Query 146353 GAACAACGTCGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGTTTCGA 146411
||| | ||||| ||||| || || || || || | || | || || ||||
Sbjct 266596 GAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCG-ACAGGAGGTTGTAGGTCTCGA 266538
Query 146412 TAGCGTCTTGAATGTCGTCG-CCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGG 146470
| || | | |||||| ||| || || || || | | || | |||||||||||| ||
Sbjct 266537 TGGCAGCGTCAATGTC-TCGCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGC 266479
Query 146471 GGCCGCTCCGCCACTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTTTGTAT 146530
|||||||| ||||||| || ||||| | || ||| | |||||| || ||| |
Sbjct 266478 GGCCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCCAGAGTCTTGAAA 266419
Query 146531 CCGAAAAATTTGTA 146544
||||| || |||||
Sbjct 266418 CCGAAGAAGTTGTA 266405
>seq541
Length=321934
Score = 118 bits (130), Expect = 1e-21
Identities = 104/130 (80%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727
|||||| |||||||| | ||| | |||||| | |||||||| |||||||||||||| |
Sbjct 160847 TGTATTCGACGATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGT 160906
Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787
| | ||||||||||| ||||||||||||||||||||||| || ||||| |||||
Sbjct 160907 TGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTCTCTGTCTGCG 160966
Query 145788 TCTCCACGAT 145797
||| | |||
Sbjct 160967 ACTCGATGAT 160976
>seq619
Length=304156
Score = 113 bits (124), Expect = 4e-20
Identities = 156/216 (72%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079
|| ||||| | || | ||| |||||||| || |||||||| || || ||||||
Sbjct 191804 CGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCA 191745
Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139
|| || ||||| ||||| || |||| | | ||||||||| ||||| || ||||||||
Sbjct 191744 TCTTCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGAATGCCTTCTTTA 191685
Query 131140 TCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198
|| ||| | | ||| || | | ||| | || || ||| ||| | || | |||||
Sbjct 191684 TCC-TGAATCTTTGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAAT 191626
Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
||| || || || |||||||| ||||||||||||||
Sbjct 191625 GGTCTTCCCAGTGAGAGTTTTCACGAAAATCTGCAT 191590
>seq1594
Length=294527
Score = 111 bits (122), Expect = 1e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
|||||| | || ||| || || | || | ||| || || || || ||||||||||||
Sbjct 183803 GCCACCCCTCAGACGGAGAACAAGGTGGAGGGTAGATTCTTTCTGGATGTTGTAATCGGA 183862
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
|| ||||| ||||| ||||||||||| || |||| | | ||||||||| || ||
Sbjct 183863 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGG 183922
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
||| || || || || |||||| ||||| | ||| | || || ||| ||| |
Sbjct 183923 GATGCCCTCCTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAAC 183982
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235
|| | ||| | ||| || ||||| || || || ||||| |||||||||
Sbjct 183983 TTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 184031
Score = 107 bits (118), Expect = 2e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
|||||| | | ||| || || | || | ||| |||||||| || |||||||| ||
Sbjct 184031 GCCACCCCTGAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 184090
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
|| |||||| || || ||||||||||| || |||| | | ||||||||| || ||
Sbjct 184091 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGG 184150
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
||| || || || || ||| || ||||| | ||| | || ||| ||| ||| |
Sbjct 184151 GATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAAC 184210
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235
|| | ||| | ||| || ||||| || || || ||||| |||||||||
Sbjct 184211 CTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 184259
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471905977603200
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