Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq406 264 1e-65 seq541 118 1e-21 seq619 113 4e-20 seq1594 111 1e-19 >seq406 Length=364117 Score = 264 bits (292), Expect = 1e-65 Identities = 987/1514 (65%), Gaps = 54/1514 (4%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||| ||| ||||| |||| || ||| | || || | ||| ||| | | Sbjct 267891 TTGACGATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCC 267832 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || | |||||||| ||||||||||| || ||||| | || ||||||||| ||||| | Sbjct 267831 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGC 267772 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || | || |||||| || ||| | ||||| ||| ||| ||||| Sbjct 267771 AGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCAC 267712 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || ||||| || ||||||||||||||||| | ||||||| |||| ||| | Sbjct 267711 AGGTCGGTCGGTGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGATGGGCGAG 267652 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG--GCGAGCTCGCAACTCGCCTCCAGAG 145355 || | | | ||| ||| || | || ||||| ||||| || |||||||| | Sbjct 267651 CCCTCGTACGTCTCGTAGGGGCCG--AGCTCTGCGGCGAGTTCGCAGCTGGCCTCCAGGG 267594 Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGT 145415 || || || || |||||| || || ||||||||||| ||||| ||| ||| Sbjct 267593 CGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGGGCTTCGGGGCTTTCGA 267534 Query 145416 ACGGCATG-CGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGC 145474 |||| ||| |||| ||| | || |||||||| || ||||| | || | ||||| ||| Sbjct 267533 ACGG-ATGTCGCATCAGGATGAAGGCATCGGCCAGACCCTGGACGCCGATCCCGATCGGC 267475 Query 145475 CGATGTTTCATGTTG-----CTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGA 145529 | || | ||||| ||| | ||| ||| | ||| | || ||| ||||| Sbjct 267474 CTGTGGCGCTTGTTGGACGTCTCGGCTTCGGGGACCGGGTAGTA-ATTGAT----GTCGA 267420 Query 145530 TAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAA 145589 | || || || | |||| ||| | |||||| || | | || ||| | ||||| | Sbjct 267419 TGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGA 267360 Query 145590 A---CCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAA 145646 | ||| ||| ||| ||| | |||| |||||| || |||| || || | Sbjct 267359 AAGTCCG---CTCTGGCGTGACGT-ACA--TGTTGAGGGCGATGGAGGCCAGGTTGCAGA 267306 Query 145647 CTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGA 145706 | ||| ||| || | | |||| | || | ||| | ||| | ||||| ||||||| Sbjct 267305 CGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCTGTGCAGAGGTTGCTGCATTTGA 267246 Query 145707 TGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACG 145766 |||| ||||| || ||||| || || ||||||||||| |||||||||||||||||||| | Sbjct 267245 TGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGG 267186 Query 145767 GTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCA-AG-TCCTGCGCACGCAC 145824 | || || || ||| | ||| | ||| || || || | |||||| ||| Sbjct 267185 GCGTCCCGGTTTCGGTCTGGGACTCGATGAT--GGCGTACCAGAGCTGCTGCGCCTTCAC 267128 Query 145825 CTGCTGCTGGTAGCGGCCCT--CTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAA 145882 | | || | | |||| |||| || ||| | ||||||||| ||| ||| | Sbjct 267127 CACCCTCT-TCACCCTCCCTTCCTTC-TCATATCTGGTGTAGAGCTTCTCGAACTCCTCT 267070 Query 145883 CCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTG 145942 || |||| ||| ||| || ||||||| | |||||||||||| ||||| | |||| Sbjct 267069 CCCCAGCACTCGTCCAGCCCAGGACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTG 267010 Query 145943 GCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC--GCG 146000 | || | || ||| |||| || || | ||||| ||||| | | ||| | || Sbjct 267009 CTTTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCT 266950 Query 146001 CTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGCGT 146060 || ||| ||||| || |||| ||||| | || | | | ||| || Sbjct 266949 CTCTGC--TCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGT 266892 Query 146061 GCCACGGTTCAATATAGACGGCGAGGGCTCC--TTTTCGT-TTGCCACCCTGGTCCACGT 146117 |||||||||| | || | ||| | ||| || | || | ||||| |||||||| |||| Sbjct 266891 GCCACGGTTCCAGGTACATGGCAAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGT 266832 Query 146118 GACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCG 146177 || || ||||||| | || | || ||| || | | ||| ||| |||||| | Sbjct 266831 AGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGG 266772 Query 146178 TAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGC 146237 | | || | | || || || | ||| || |||||||| || || Sbjct 266771 TGCCGGCAATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCCCCAG 266712 Query 146238 CGTACTTGGATAT-AGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG 146296 || ||||||| || ||| ||||| | || || ||||||||||| || ||||| ||| Sbjct 266711 CGGACTTGGAAATGAGC-GCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCG 266653 Query 146297 --CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGG--CGTCCCCGCCGA 146352 |||| ||| | ||||| ||||| | ||| ||||| | ||| ||||| || Sbjct 266652 TCCTTC--ATGGCAAGCAGGAAGCAGCTGGACAGCTGCGGC--CGGTTGGTCCCGGCGTT 266597 Query 146353 GAACAACGTCGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGTTTCGA 146411 ||| | ||||| ||||| || || || || || | || | || || |||| Sbjct 266596 GAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCG-ACAGGAGGTTGTAGGTCTCGA 266538 Query 146412 TAGCGTCTTGAATGTCGTCG-CCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGG 146470 | || | | |||||| ||| || || || || | | || | |||||||||||| || Sbjct 266537 TGGCAGCGTCAATGTC-TCGCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGC 266479 Query 146471 GGCCGCTCCGCCACTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTTTGTAT 146530 |||||||| ||||||| || ||||| | || ||| | |||||| || ||| | Sbjct 266478 GGCCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCCAGAGTCTTGAAA 266419 Query 146531 CCGAAAAATTTGTA 146544 ||||| || ||||| Sbjct 266418 CCGAAGAAGTTGTA 266405 >seq541 Length=321934 Score = 118 bits (130), Expect = 1e-21 Identities = 104/130 (80%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||||| |||||||| | ||| | |||||| | |||||||| |||||||||||||| | Sbjct 160847 TGTATTCGACGATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGT 160906 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 | | ||||||||||| ||||||||||||||||||||||| || ||||| ||||| Sbjct 160907 TGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTCTCTGTCTGCG 160966 Query 145788 TCTCCACGAT 145797 ||| | ||| Sbjct 160967 ACTCGATGAT 160976 >seq619 Length=304156 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || ||||| | || | ||| |||||||| || |||||||| || || |||||| Sbjct 191804 CGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCA 191745 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || ||||| ||||| || |||| | | ||||||||| ||||| || |||||||| Sbjct 191744 TCTTCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGAATGCCTTCTTTA 191685 Query 131140 TCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 || ||| | | ||| || | | ||| | || || ||| ||| | || | ||||| Sbjct 191684 TCC-TGAATCTTTGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAAT 191626 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| || || || |||||||| |||||||||||||| Sbjct 191625 GGTCTTCCCAGTGAGAGTTTTCACGAAAATCTGCAT 191590 >seq1594 Length=294527 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || ||| || || | || | ||| || || || || |||||||||||| Sbjct 183803 GCCACCCCTCAGACGGAGAACAAGGTGGAGGGTAGATTCTTTCTGGATGTTGTAATCGGA 183862 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||| || |||| | | ||||||||| || || Sbjct 183863 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGG 183922 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || || || |||||| ||||| | ||| | || || ||| ||| | Sbjct 183923 GATGCCCTCCTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAAC 183982 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || ||||| || || || ||||| ||||||||| Sbjct 183983 TTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 184031 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | | ||| || || | || | ||| |||||||| || |||||||| || Sbjct 184031 GCCACCCCTGAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 184090 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || ||||||||||| || |||| | | ||||||||| || || Sbjct 184091 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGG 184150 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || || || ||| || ||||| | ||| | || ||| ||| ||| | Sbjct 184151 GATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAAC 184210 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || ||||| || || || ||||| ||||||||| Sbjct 184211 CTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 184259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471905977603200