Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13]
18,105 sequences; 801,711,499 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq619 111 1e-19
seq1594 102 7e-17
>seq619
Length=304156
Score = 111 bits (122), Expect = 1e-19
Identities = 156/217 (72%), Gaps = 4/217 (2%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || ||||||||||| || ||||||||||| | || ||| | | ||
Sbjct 191801 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCT 191742
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|||| |||||||| ||| | || || | ||| ||||| ||| | ||| ||||| ||
Sbjct 191741 TCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC 191682
Query 16844 GCAAT--TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
||| |||| |||||| | | | ||||| | ||||||| |||| ||| ||||
Sbjct 191681 TGAATCTTTGC--CTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGG 191624
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938
| || || || || ||||| || ||||||||||| ||
Sbjct 191623 TCTTCCCAGTGAGAGTTTTCACGAAAATCTGCATCTT 191587
>seq1594
Length=294527
Score = 102 bits (112), Expect = 7e-17
Identities = 152/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || ||||||||||| || ||||||||||| | || ||| | | ||
Sbjct 184047 AGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 184106
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|||| || ||||| ||| | || |||| ||| ||||| || | |||||| || ||
Sbjct 184107 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 184166
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || || ||| || | | | ||||||| |||||| |||| ||||||||
Sbjct 184167 TGGATCTTGGC--CTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGG 184224
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| || ||||| || || ||||| || ||||||||
Sbjct 184225 TCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 184258
Score = 98.7 bits (108), Expect = 8e-16
Identities = 153/217 (71%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| || | ||| || ||||| || ||||| || |||||||| | || ||| | | ||
Sbjct 184275 AGGACAAGATGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCT 184334
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|||| || || || ||| | || |||| ||| ||||| || | |||||| || ||
Sbjct 184335 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 184394
Query 16844 GCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|||| ||| || || | | | ||||||| ||| ||| |||| ||||||||
Sbjct 184395 TGGATTTTGGCT--TTGACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGG 184452
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938
|||| ||||| || || |||||||| |||||||| ||
Sbjct 184453 TTTTGCCGGTGAGGGTCTTGACAAAGATCTGCATGTT 184489
Score = 95.1 bits (104), Expect = 1e-14
Identities = 153/218 (70%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || ||||| || || || ||||||||||| | || ||| | | ||
Sbjct 188239 AGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 188298
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|||| || || || ||| | || |||| ||| ||||| || | |||||| || ||
Sbjct 188299 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 188358
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || || ||| || | | | ||||| | ||||||| || | ||||||||
Sbjct 188359 TGGATCTTGGC--CTTAACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGG 188416
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
|||| ||||| || ||||| ||||| |||||||| |||
Sbjct 188417 TTTTGCCGGTGAGGGTTTTCACAAAGATCTGCATCTTG 188454
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
|| || ||||||||||| || ||||||||||| | | ||| | | || |||| ||
Sbjct 188020 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGC 188079
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852
|| || ||| | || |||| ||| ||||| || | |||||| || || ||||
Sbjct 188080 TTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTG 188139
Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912
||| || | | | ||||| | |||||| |||| |||||||||||| |||||
Sbjct 188140 GCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTTTTGCCGGTG 188199
Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935
|| || ||||| || ||||||||
Sbjct 188200 AGGGTCTTGACGAAGATCTGCAT 188222
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 404998615433950
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |