Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13]
18,105 sequences; 801,711,499 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq3703 118 7e-22
seq2947 118 7e-22
seq2594 118 7e-22
seq469 116 2e-21
seq3602 109 4e-19
seq2799 109 4e-19
seq2519 95.1 8e-15
>seq3703
Length=77674
Score = 118 bits (130), Expect = 7e-22
Identities = 83/95 (87%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| ||| | || ||||| || ||||||||
Sbjct 44679 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATGGGAGTTAGGGACAGTGGGAATCTCGT 44620
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 44619 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 44585
>seq2947
Length=64572
Score = 118 bits (130), Expect = 7e-22
Identities = 83/95 (87%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| ||| | || ||||| || ||||||||
Sbjct 54156 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATGGGAGTTAGGGACAGTGGGAATCTCGT 54097
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 54096 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 54062
>seq2594
Length=100498
Score = 118 bits (130), Expect = 7e-22
Identities = 83/95 (87%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| ||| | || ||||| || ||||||||
Sbjct 21778 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATGGGAGTTAGGGACAGTGGGAATCTCGT 21837
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 21838 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 21872
>seq469
Length=342873
Score = 116 bits (128), Expect = 2e-21
Identities = 129/172 (75%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378
||||||| || | ||| || || ||||| || |||||||| ||||||||| ||||||||
Sbjct 29256 ACCCGACCAAGTTTTTTGGTTGTGAACTCGGTGCTCAGACCCAGTTTGATACCAAAAACG 29197
Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438
| || | |||||| |||||||| || | | |||| ||||||| | ||||| || |
Sbjct 29196 ATCGTTACATCGTCAACGGATCCCACGAGGCGAACAAGTTGCAGGATATGCTTGATGGGT 29137
Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490
| || | || ||||||||||||| || || || ||||| || || || ||
Sbjct 29136 TCATCAGAAAATTTGTGCTGTGTCCTGAGTGTGACAACCCTGAAACTGACCT 29085
>seq3602
Length=41555
Score = 109 bits (120), Expect = 4e-19
Identities = 81/95 (85%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| ||| | || |||| || ||||||||
Sbjct 472 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATGGGAGTTAGGTACAGTGGGAATCTCGT 531
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| |||||| |||||||||||||||||||||
Sbjct 532 TCATCCATTCATGTGCGTCACTAATTAGATGACGA 566
>seq2799
Length=75330
Score = 109 bits (120), Expect = 4e-19
Identities = 81/95 (85%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||| || ||| | || ||||| || ||| ||||
Sbjct 66689 AAGCCCGTTCCCTTGGCTGTGGTTTCTCTGGATGGGAGTTAGGGACAGGGGGAATGTCGT 66748
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 66749 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 66783
>seq2519
Length=83630
Score = 95.1 bits (104), Expect = 8e-15
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||
Sbjct 44603 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTCGACTATCGGTCTCGT 44544
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||||||||
Sbjct 44543 GCCGGTATTTAGCCTTA 44527
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334873292330255
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |