Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13]
18,105 sequences; 801,711,499 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq406 425 7e-114
seq541 107 2e-18
>seq406
Length=364117
Score = 425 bits (470), Expect = 7e-114
Identities = 1289/1978 (65%), Gaps = 29/1978 (1%)
Strand=Plus/Minus
Query 62098 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62157
|||||||||||| | ||| || | | | ||||| ||||| || ||||| | |
Sbjct 267979 CTGAATGGATCCGTTGTTTGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCACG 267920
Query 62158 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62217
||| || | | | ||||| || || || || | || || ||||| |||| || ||
Sbjct 267919 CTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCT 267860
Query 62218 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 62277
|| ||||| || || ||||| |||| || | ||||| || || |||| || || ||
Sbjct 267859 GCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 267800
Query 62278 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62337
|| || || || ||||| || |||| || | || || || | |||| | | |||
Sbjct 267799 GGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGAT 267740
Query 62338 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 62397
|| || || || | | ||| | ||| || || | ||||
Sbjct 267739 CTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTCGGTGTCTTCTCCCACATGTCGTA 267680
Query 62398 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 62457
|| || || || || ||| | ||| || | || || ||||| || || || |
Sbjct 267679 CTGGAGGATGCCCTTGCTGATGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGC 267620
Query 62458 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 62517
|| ||||| || || ||||| | || ||| || ||||| |||||||||| | ||
Sbjct 267619 GGCGAGTTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTT 267560
Query 62518 TAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAA 62577
|| || ||||| |||| || || |||| | || || || || || || |
Sbjct 267559 GAGCAGCTGGGCTTCGGGGCTTTCGAACGGATGTCGCATCAGGATGAAGGCATCGGCCAG 267500
Query 62578 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 62637
|| || || || || ||||| || || || | ||| || || | || ||||| || |
Sbjct 267499 ACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGACGTCTCGGCTTCGGGGAC 267440
Query 62638 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATC 62697
|| || ||||| || || || || || ||||| ||| | || ||||| ||| ||
Sbjct 267439 CGGGTAGTAATTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGA 267380
Query 62698 CTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAATGCAACAGA 62754
||| || || || || || ||| | || ||||||| | || | ||
Sbjct 267379 GGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTGAGGGCGATGGA 267320
Query 62755 TGCCAGATTACAAACGGCTACCTCATTAGCATCC--GCATATTGTATTATCTCAGTGCAA 62812
||||| || || ||||| ||||| | | | | | || | | | ||| |||||
Sbjct 267319 GGCCAGGTTGCAGACGGCCACCTCGTC--CTTGCTGGTGTACTCCACCACCTCTGTGCAG 267262
Query 62813 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 62872
|| || || || |||||||| || | || || || || ||||| |||| || || |||
Sbjct 267261 AGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCC 267202
Query 62873 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-C 62931
|| || || ||| | || || || ||||| |||| || || || || || | ||||| |
Sbjct 267201 TTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAGC 267142
Query 62932 GACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATA--GTGTATACAAT 62989
|| | ||||| | | || ||| ||| | || ||| ||||| | |
Sbjct 267141 TGCT-GCGCCTTCACCACCCTCTTCACCCTCCCTTCCTTCTCATATCTGGTGTAGAGCTT 267083
Query 62990 CGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAAC 63049
| |||||||| |||||||| | |||||| |||||||| || |||||||||||
Sbjct 267082 C--TCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACACTCGCTGGGACACATCAAG 267025
Query 63050 GACCACTCTCCGTCATCCTT--CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-T 63106
||||| || || | ||| ||||| ||||| || || || || ||||| | || |
Sbjct 267024 GACCAGTCCTGGT--TGCTTTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGCGT 266967
Query 63107 ATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 63166
| ||| || ||||||| ||| || ||||| |||||||| ||||| || || || |||||
Sbjct 266966 AGAAA-AGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAG 266908
Query 63167 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 63226
| | | || | ||||||||||||| ||| ||||| | | || || | |||||
Sbjct 266907 TCGAACACGTCGAAGTGCCACGGTTCCAGGTACATGGCAAAGGCCCCGGGTCTCTTGTTG 266848
Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286
|| ||||| || | ||| | ||| ||||| || |||||||||| ||| || | | ||
Sbjct 266847 CCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCG 266788
Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346
||||| | || ||||| || | || |||||||| | | || || || | |
Sbjct 266787 TTGGAGTTGCCGTTGGTGCCGGCAATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCC 266728
Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406
| || || ||||| || || || || | ||||| | || | || || ||||||
Sbjct 266727 ACGCCGATCCCCCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATG 266668
Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 63466
|| || || || || ||| ||||| ||| || || ||||| |||| || | || |
Sbjct 266667 CCTTCGATGCTGTCGTCCTTCATGGCAAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTG 266608
Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526
|| || || || || | ||| ||||| ||||| || ||||| || || || || || |||
Sbjct 266607 GTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTG 266548
Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586
|| ||||| || || | ||| || || | || || || || | || | ||| | |
Sbjct 266547 TAGGTCTCGATGGCAGCGTCAATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGC 266488
Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646
|||||||| || | || | | || ||| || |||| || |||||| |||| |
Sbjct 266487 ATGTGCTGCGGCCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCCAGA 266428
Query 63647 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 63706
|| || ||||| || ||||||| || || |||| |||||||| || || |||||
Sbjct 266427 GTCTTGAAACCGAAGAAGTTGTAGGAGAAATCTCTGTCGTAAATGATGGAGGAATTGAGG 266368
Query 63707 TTATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATAGGAAAAT---G 63762
||||| | || | || | || | || | ||| || || || ||| | | |
Sbjct 266367 CGGTCCTTGTTTTCCATGACGATGTCGAGCGT-CTCCTTGGAGATCATGGGAGAGTGGCG 266309
Query 63763 TTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttt 63822
||| || ||| ||||| ||| ||| | || |||||||| || || || | ||
Sbjct 266308 TTT---GTTCAGAGGGTTGACGTAGGCGAACAGGTCTTCCATCACCTCGCTGAACACCTT 266252
Query 63823 ttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGG 63882
|| || || ||||| || || || ||||| || || ||||| || ||||| || || ||
Sbjct 266251 CTTGGTCTCCTTGTGCAGGTTGGAGACGGCAATCCTCGCGGCCAGGATGGCGTAGTCGGG 266192
Query 63883 ATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGT 63942
|||| || || ||||| || || || || || || ||||| | || || || ||
Sbjct 266191 GTGTTTGGTCGTCAGGGTGGCCGCGATCTCCGCCGCTAGCGTGTCAAGCTCCACGGTGGT 266132
Query 63943 TACACCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATC 64002
|| || | || | || ||||| |||||||| | || | | ||||| | | ||
Sbjct 266131 GACGCCGCTGTACAAGCCCTGGATCACCTTCATGGTGATCTGAGCTGGATCCACAAAGTC 266072
Query 64003 AGTGTTTAAGCCATAACATAATTTTCT-AATACGAGATGTGATTTTATCAAACATGAC 64059
| ||| | ||| || || || |||| || || || ||||||||||| ||||||||
Sbjct 266071 CGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGCGGGAGGTGATTTTATCGAACATGAC 266015
Score = 93.3 bits (102), Expect = 5e-14
Identities = 122/169 (72%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976
|||| ||||| || ||||| || || ||||| || |||| || || || ||||| |
Sbjct 268242 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTCGGCTCAGCGATGTGGATGT 268183
Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036
||| || || || || |||||||||||||| | |||||| ||||| | | | ||||
Sbjct 268182 TCAGCGACTGGCTCTGGTCGATGAAGGCTCCACGGTCTGCCGCCATCCTCAGCACGGTCT 268123
Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62085
| || | |||||||||| |||||||| | |||| | || |||||
Sbjct 268122 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGGTCCTCTGG 268074
>seq541
Length=321934
Score = 107 bits (118), Expect = 2e-18
Identities = 125/169 (74%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976
||||||||||||| ||||| || || |||||| || | || || || || || || |
Sbjct 158005 TCCATCCGTAAAAGTGCATGCTGGTGAGTTTGCCGTAGTTTGGCTCAGCGATGTGAATGT 158064
Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036
||| ||||||||| ||||||||| ||| || | ||||| ||||| || | | || |
Sbjct 158065 TCAGAGATTGACTCTGATCGATGTAGGTGCCACGATCTGCTGCCATCTTCAGGACGGTTT 158124
Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62085
| || | |||||||||| |||||||| | |||| | |||||||||
Sbjct 158125 TCTGGGAGATTTCCCAAACTGTTTTATAGAGCTGCTTCAGATCTTCTGG 158173
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633488601158000
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