Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq406 425 7e-114 seq541 107 2e-18 >seq406 Length=364117 Score = 425 bits (470), Expect = 7e-114 Identities = 1289/1978 (65%), Gaps = 29/1978 (1%) Strand=Plus/Minus Query 62098 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62157 |||||||||||| | ||| || | | | ||||| ||||| || ||||| | | Sbjct 267979 CTGAATGGATCCGTTGTTTGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCACG 267920 Query 62158 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62217 ||| || | | | ||||| || || || || | || || ||||| |||| || || Sbjct 267919 CTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCT 267860 Query 62218 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 62277 || ||||| || || ||||| |||| || | ||||| || || |||| || || || Sbjct 267859 GCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 267800 Query 62278 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62337 || || || || ||||| || |||| || | || || || | |||| | | ||| Sbjct 267799 GGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGAT 267740 Query 62338 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 62397 || || || || | | ||| | ||| || || | |||| Sbjct 267739 CTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTCGGTGTCTTCTCCCACATGTCGTA 267680 Query 62398 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 62457 || || || || || ||| | ||| || | || || ||||| || || || | Sbjct 267679 CTGGAGGATGCCCTTGCTGATGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGC 267620 Query 62458 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 62517 || ||||| || || ||||| | || ||| || ||||| |||||||||| | || Sbjct 267619 GGCGAGTTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTT 267560 Query 62518 TAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAA 62577 || || ||||| |||| || || |||| | || || || || || || | Sbjct 267559 GAGCAGCTGGGCTTCGGGGCTTTCGAACGGATGTCGCATCAGGATGAAGGCATCGGCCAG 267500 Query 62578 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 62637 || || || || || ||||| || || || | ||| || || | || ||||| || | Sbjct 267499 ACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGACGTCTCGGCTTCGGGGAC 267440 Query 62638 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATC 62697 || || ||||| || || || || || ||||| ||| | || ||||| ||| || Sbjct 267439 CGGGTAGTAATTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGA 267380 Query 62698 CTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAATGCAACAGA 62754 ||| || || || || || ||| | || ||||||| | || | || Sbjct 267379 GGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTGAGGGCGATGGA 267320 Query 62755 TGCCAGATTACAAACGGCTACCTCATTAGCATCC--GCATATTGTATTATCTCAGTGCAA 62812 ||||| || || ||||| ||||| | | | | | || | | | ||| ||||| Sbjct 267319 GGCCAGGTTGCAGACGGCCACCTCGTC--CTTGCTGGTGTACTCCACCACCTCTGTGCAG 267262 Query 62813 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 62872 || || || || |||||||| || | || || || || ||||| |||| || || ||| Sbjct 267261 AGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCC 267202 Query 62873 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-C 62931 || || || ||| | || || || ||||| |||| || || || || || | ||||| | Sbjct 267201 TTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAGC 267142 Query 62932 GACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATA--GTGTATACAAT 62989 || | ||||| | | || ||| ||| | || ||| ||||| | | Sbjct 267141 TGCT-GCGCCTTCACCACCCTCTTCACCCTCCCTTCCTTCTCATATCTGGTGTAGAGCTT 267083 Query 62990 CGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAAC 63049 | |||||||| |||||||| | |||||| |||||||| || ||||||||||| Sbjct 267082 C--TCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACACTCGCTGGGACACATCAAG 267025 Query 63050 GACCACTCTCCGTCATCCTT--CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-T 63106 ||||| || || | ||| ||||| ||||| || || || || ||||| | || | Sbjct 267024 GACCAGTCCTGGT--TGCTTTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGCGT 266967 Query 63107 ATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 63166 | ||| || ||||||| ||| || ||||| |||||||| ||||| || || || ||||| Sbjct 266966 AGAAA-AGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAG 266908 Query 63167 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 63226 | | | || | ||||||||||||| ||| ||||| | | || || | ||||| Sbjct 266907 TCGAACACGTCGAAGTGCCACGGTTCCAGGTACATGGCAAAGGCCCCGGGTCTCTTGTTG 266848 Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 || ||||| || | ||| | ||| ||||| || |||||||||| ||| || | | || Sbjct 266847 CCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCG 266788 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 ||||| | || ||||| || | || |||||||| | | || || || | | Sbjct 266787 TTGGAGTTGCCGTTGGTGCCGGCAATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCC 266728 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | || || ||||| || || || || | ||||| | || | || || |||||| Sbjct 266727 ACGCCGATCCCCCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATG 266668 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 63466 || || || || || ||| ||||| ||| || || ||||| |||| || | || | Sbjct 266667 CCTTCGATGCTGTCGTCCTTCATGGCAAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTG 266608 Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || || || || | ||| ||||| ||||| || ||||| || || || || || ||| Sbjct 266607 GTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTG 266548 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || ||||| || || | ||| || || | || || || || | || | ||| | | Sbjct 266547 TAGGTCTCGATGGCAGCGTCAATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGC 266488 Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646 |||||||| || | || | | || ||| || |||| || |||||| |||| | Sbjct 266487 ATGTGCTGCGGCCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCCAGA 266428 Query 63647 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 63706 || || ||||| || ||||||| || || |||| |||||||| || || ||||| Sbjct 266427 GTCTTGAAACCGAAGAAGTTGTAGGAGAAATCTCTGTCGTAAATGATGGAGGAATTGAGG 266368 Query 63707 TTATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATAGGAAAAT---G 63762 ||||| | || | || | || | || | ||| || || || ||| | | | Sbjct 266367 CGGTCCTTGTTTTCCATGACGATGTCGAGCGT-CTCCTTGGAGATCATGGGAGAGTGGCG 266309 Query 63763 TTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttt 63822 ||| || ||| ||||| ||| ||| | || |||||||| || || || | || Sbjct 266308 TTT---GTTCAGAGGGTTGACGTAGGCGAACAGGTCTTCCATCACCTCGCTGAACACCTT 266252 Query 63823 ttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGG 63882 || || || ||||| || || || ||||| || || ||||| || ||||| || || || Sbjct 266251 CTTGGTCTCCTTGTGCAGGTTGGAGACGGCAATCCTCGCGGCCAGGATGGCGTAGTCGGG 266192 Query 63883 ATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGT 63942 |||| || || ||||| || || || || || || ||||| | || || || || Sbjct 266191 GTGTTTGGTCGTCAGGGTGGCCGCGATCTCCGCCGCTAGCGTGTCAAGCTCCACGGTGGT 266132 Query 63943 TACACCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATC 64002 || || | || | || ||||| |||||||| | || | | ||||| | | || Sbjct 266131 GACGCCGCTGTACAAGCCCTGGATCACCTTCATGGTGATCTGAGCTGGATCCACAAAGTC 266072 Query 64003 AGTGTTTAAGCCATAACATAATTTTCT-AATACGAGATGTGATTTTATCAAACATGAC 64059 | ||| | ||| || || || |||| || || || ||||||||||| |||||||| Sbjct 266071 CGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGCGGGAGGTGATTTTATCGAACATGAC 266015 Score = 93.3 bits (102), Expect = 5e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| ||||| || ||||| || || ||||| || |||| || || || ||||| | Sbjct 268242 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTCGGCTCAGCGATGTGGATGT 268183 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| || || || || |||||||||||||| | |||||| ||||| | | | |||| Sbjct 268182 TCAGCGACTGGCTCTGGTCGATGAAGGCTCCACGGTCTGCCGCCATCCTCAGCACGGTCT 268123 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62085 | || | |||||||||| |||||||| | |||| | || ||||| Sbjct 268122 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGGTCCTCTGG 268074 >seq541 Length=321934 Score = 107 bits (118), Expect = 2e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 ||||||||||||| ||||| || || |||||| || | || || || || || || | Sbjct 158005 TCCATCCGTAAAAGTGCATGCTGGTGAGTTTGCCGTAGTTTGGCTCAGCGATGTGAATGT 158064 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| ||||||||| ||||||||| ||| || | ||||| ||||| || | | || | Sbjct 158065 TCAGAGATTGACTCTGATCGATGTAGGTGCCACGATCTGCTGCCATCTTCAGGACGGTTT 158124 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62085 | || | |||||||||| |||||||| | |||| | ||||||||| Sbjct 158125 TCTGGGAGATTTCCCAAACTGTTTTATAGAGCTGCTTCAGATCTTCTGG 158173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633488601158000