Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq1594 105 6e-18 >seq1594 Length=294527 Score = 105 bits (116), Expect = 6e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 111183 AAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACC 111242 ||| ||||| || |||||||| || | |||||||||||||| ||| |||| |||||| Sbjct 184490 AAACATGCAGATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAACC 184431 Query 111243 CAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGA 111302 |||||| | ||| | || ||| ||||| || || || ||| | ||| || Sbjct 184430 CAGCGACACCATTGAGAACGTCAAAGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGA 184371 Query 111303 TCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 111362 || || ||||| || | ||| || || || |||||||| || || | || || Sbjct 184370 CCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTA 184311 Query 111363 TAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 ||||| ||||||||||| || || ||| | || | |||||| | ||||||| Sbjct 184310 CAATATCCAAAAAGAATCCACCCTCCATCTTGTCCTCCGTCTGAGGGGTGGCA 184258 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/236 (68%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || || ||||| || | |||||||| ||||| ||| ||||| || ||||| Sbjct 184030 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 183971 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || || ||||| || || || ||| | ||| || || Sbjct 183970 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 183911 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||||| || | ||| ||||| || |||| ||| ||| || ||||||| || Sbjct 183910 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGATTACAAC 183851 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG-CAATAAAT 111421 || || ||||||||||| || || | || | |||||| | ||||| || ||||| Sbjct 183850 ATCCAGAAAGAATCTACCCTCCACCTTGTTCTCCGTCTGAGGGGTGGCCAGTAAAT 183795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422946654241000