Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13]
18,105 sequences; 801,711,499 total letters
Query= NC_008520.2
Length=132239
Score E
Sequences producing significant alignments: (Bits) Value
seq1594 105 6e-18
>seq1594
Length=294527
Score = 105 bits (116), Expect = 6e-18
Identities = 163/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 111183 AAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACC 111242
||| ||||| || |||||||| || | |||||||||||||| ||| |||| ||||||
Sbjct 184490 AAACATGCAGATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAACC 184431
Query 111243 CAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGA 111302
|||||| | ||| | || ||| ||||| || || || ||| | ||| ||
Sbjct 184430 CAGCGACACCATTGAGAACGTCAAAGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGA 184371
Query 111303 TCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 111362
|| || ||||| || | ||| || || || |||||||| || || | || ||
Sbjct 184370 CCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTA 184311
Query 111363 TAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415
||||| ||||||||||| || || ||| | || | |||||| | |||||||
Sbjct 184310 CAATATCCAAAAAGAATCCACCCTCCATCTTGTCCTCCGTCTGAGGGGTGGCA 184258
Score = 84.2 bits (92), Expect = 2e-11
Identities = 161/236 (68%), Gaps = 1/236 (0%)
Strand=Plus/Minus
Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246
||||| || || ||||| || | |||||||| ||||| ||| ||||| || |||||
Sbjct 184030 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 183971
Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306
|| | ||| | || || ||||| || || || ||| | ||| || ||
Sbjct 183970 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 183911
Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366
|| ||||| || | ||| ||||| || |||| ||| ||| || ||||||| ||
Sbjct 183910 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGATTACAAC 183851
Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG-CAATAAAT 111421
|| || ||||||||||| || || | || | |||||| | ||||| || |||||
Sbjct 183850 ATCCAGAAAGAATCTACCCTCCACCTTGTTCTCCGTCTGAGGGGTGGCCAGTAAAT 183795
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422946654241000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |