Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13]
18,105 sequences; 801,711,499 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq1594 127 2e-24
seq406 89.7 4e-13
>seq1594
Length=294527
Score = 127 bits (140), Expect = 2e-24
Identities = 153/208 (74%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274
||| ||||| || ||||| || || | ||||| ||||| |||| || || |||||| |
Sbjct 184490 AAACATGCAGATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAACC 184431
Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334
|| ||| ||| | || | ||||| ||||| || || |||||||| || || || ||
Sbjct 184430 CAGCGACACCATTGAGAACGTCAAAGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGA 184371
Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394
|| || | || || |||||||| || ||| | || ||| ||||||| | || || ||
Sbjct 184370 CCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTA 184311
Query 22395 CAACATTCAAAAAGAATCCACCATACAT 22422
||| || ||||||||||||||| | |||
Sbjct 184310 CAATATCCAAAAAGAATCCACCCTCCAT 184283
Score = 118 bits (130), Expect = 9e-22
Identities = 146/200 (73%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|||||||| || ||||| ||||| | ||||| ||||| |||| ||||| ||||| ||
Sbjct 188453 AAGATGCAGATCTTTGTGAAAACCCTCACCGGCAAAACCATCACCCTTGAGGTGGAGCCC 188394
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| || ||| | || || | || || || || || |||||||| || || || ||
Sbjct 188393 AGTGACACCATTGAGAATGTTAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGAC 188334
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| || | || || |||||||| || ||| | || ||| ||||||| | || || |||
Sbjct 188333 CAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTAC 188274
Query 22396 AACATTCAAAAAGAATCCAC 22415
||||| || |||||||||||
Sbjct 188273 AACATCCAGAAAGAATCCAC 188254
Score = 114 bits (126), Expect = 1e-20
Identities = 144/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | ||||| || || |||| || ||||| || |||
Sbjct 184030 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 183971
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || || |||| ||||| || || |||||||| || || || || ||
Sbjct 183970 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 183911
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | || || ||||||||||| ||| | |||||| |||||| | ||||||||||||
Sbjct 183910 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGATTACAAC 183851
Query 22399 ATTCAAAAAGAATCCACC 22416
|| || |||||||| |||
Sbjct 183850 ATCCAGAAAGAATCTACC 183833
>seq406
Length=364117
Score = 89.7 bits (98), Expect = 4e-13
Identities = 173/255 (68%), Gaps = 3/255 (1%)
Strand=Plus/Minus
Query 130014 TTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTT 130073
||| |||| ||||| |||| || || | ||||| |||||| || | |||| ||| |
Sbjct 267007 TTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCT 266948
Query 130074 TCTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCA 130133
||||| || |||| ||||| || ||||| ||| | | |||| ||||||
Sbjct 266947 CTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCA 266888
Query 130134 CGGTTCAACATAAATTGCCATTGCGCCCT---TCCGTTTGCCCCCTTGGTCAACGTGGCG 130190
|||||| | || || || | || || || ||||| || ||||| |||| |||
Sbjct 266887 CGGTTCCAGGTACATGGCAAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTAGCG 266828
Query 130191 CACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCT 130250
| | |||||||| |||| || ||| | |||||||||||| ||||||| ||||
Sbjct 266827 AGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGCC 266768
Query 130251 CTCAATGAAACTGCC 130265
||||| | || ||
Sbjct 266767 GGCAATGTAGCTTCC 266753
Score = 82.4 bits (90), Expect = 6e-11
Identities = 110/153 (72%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 129697 ATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCG 129756
|| ||||||| ||||||||||| |||| ||| ||||||| || | || | |
Sbjct 267324 ATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCTGTG 267265
Query 129757 CACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCA 129816
|| | || || ||| |||||||||| | || || || || ||| ||||||||||
Sbjct 267264 CAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCG 267205
Query 129817 TCTTTGTACATCATGTACGGCGTGCCCGTTTCG 129849
|| ||||| | |||||| ||||| || ||||||
Sbjct 267204 TCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCG 267172
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419635385049325
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |