Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq406 107 4e-18 seq2560 93.3 9e-14 seq2244 93.3 9e-14 seq1289 93.3 9e-14 seq256 93.3 9e-14 seq3450 91.5 3e-13 seq2686 91.5 3e-13 seq2179 91.5 3e-13 seq2022 91.5 3e-13 seq260 91.5 3e-13 seq211 91.5 3e-13 seq1006 89.7 1e-12 seq427 87.8 4e-12 seq1612 86.0 1e-11 >seq406 Length=364117 Score = 107 bits (118), Expect = 4e-18 Identities = 590/927 (64%), Gaps = 30/927 (3%) Strand=Plus/Minus Query 293527 TACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCA 293586 ||||| | ||| ||||||||| || || ||||| | || | |||||| |||| Sbjct 267681 TACTGGAGGATGCCCTTGCTGATGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCT 267622 Query 293587 TCAGAGAGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGG 293646 | | ||| ||||| ||||| | || || ||| ||| ||||||||||| | Sbjct 267621 GCGGCGAGTTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATG 267562 Query 293647 TTGAGCTTGCGAGCCTGCTCAGAG---TCAAACGGCATCTT-CAGCTGGAAGAACACATC 293702 |||||| || | || || | | || ||||| || | || | ||| ||| |||| Sbjct 267561 TTGAGCA-GCTGGGCT--TCGGGGCTTTCGAACGG-ATGTCGCATCAGGATGAAGGCATC 267506 Query 293703 CTGCAGACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTC 293762 ||||||||| || || | || | || | | ||||||||| |||||| || || Sbjct 267505 GGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGACGTCTCGGCTTC 267446 Query 293763 GGGAACCGCATATGCCATCACATCAATGCTCCTGTCCAGGTTCTTCGTGAGAACCTTGAC 293822 ||| |||| || | | || ||| || ||| ||||| ||| || |||||| Sbjct 267445 GGGGACCGGGTAGTAATTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGG- 267387 Query 293823 ATGCTTGCGG--AGGTCCTCAAAGTCAAATGCA---TCATTCTTGACATAGTTCTTGAGC 293877 || | || || | || ||||| || | || | |||| || | ||||| Sbjct 267386 -TGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTGAGG 267328 Query 293878 ACGATGCTACCGATGACACACACTGCAGTCTCCTCCTTCGAGGTGTACTCGACAATCTCA 293937 ||||| | | | || || || ||| ||||| ||||||||| || | ||| Sbjct 267327 GCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCT 267268 Query 293938 GCACAGAGGTTACTGCCCTTGATGGTGCCCGCATTAGACTGCATGTTCTTGGCATTGACA 293997 | |||||||| |||| |||||||||||| || ||| || |||| ||| | Sbjct 267267 GTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAA 267208 Query 293998 CTGTCTTTGTTGAGGACATATGGCATACCCGTTTCAATCTGAGTGGTGACCATGGTGTTC 294057 ||| |||| ||| | || ||| | || ||||| |||| | || |||| || | Sbjct 267207 GCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTAC 267148 Query 294058 CAGACATCGCGAGCCTTCACCACGCGCTTTGCCTTCCCCTCAGACTCATACTTGGTGTAA 294117 |||| | | ||||||||||| | ||| || |||| || |||||| ||||||| Sbjct 267147 CAGAGCTGCTGCGCCTTCACCACCCTCTTCACCCTCCCTTCCTTCTCATATCTGGTGTAG 267088 Query 294118 AGCTCTTCGTATTCCTTGCCATATACATCAGACAGGCCAGGGCACTCGTGAGGGTCA-AG 294176 |||| ||| | |||| || | || ||| ||||| |||||| ||| || | Sbjct 267087 AGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACACTCG-CTGGGACACAT 267029 Query 294177 TAGAGACCA---CTGGGCATCAGTCTCCACGCGCTTCATGAATAGATCATTGACCCACAT 294233 | ||||| |||| | | ||||| | ||||||||| || || || ||||| Sbjct 267028 CAAGGACCAGTCCTGG---TTGCTTTCCACTCTCTTCATGAACAGGTCCGGGATCCACAA 266972 Query 294234 TGCGTAAAACAAGTTGCGGGCGCGCAGGCTCTCCTCACCT-TGAT-TACGACGGAGGAGC 294291 ||||| || | || | ||| | | | ||||| ||| || | | | | || | Sbjct 266971 GGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTC--AGCTCC 266914 Query 294292 AGGAAGTCCATGATGTCGGGATGATGGGGTTCCAGATACACAGCAAAGGACCC---CTTC 294348 |||||||| | | |||| || |||||||| |||| ||||||| ||| || Sbjct 266913 AGGAAGTCGAACACGTCGAAGTGCCACGGTTCCAGGTACATGGCAAAGGCCCCGGGTCTC 266854 Query 294349 CTGCGTCCCCCCTGGTTGGCGTAGGCAGATGTGGTGTCAAACACCTTCAGCATAGGCACG 294408 || || ||||||| | ||||| || ||| ||| | || ||||||| || || Sbjct 266853 TTGTTGCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACC 266794 Query 294409 ATGCCATCGGACTCACCATTGGTTCCG 294435 | || | ||| | || ||||| ||| Sbjct 266793 AATCCGTTGGAGTTGCCGTTGGTGCCG 266767 >seq2560 Length=140597 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 98435 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 98376 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 98375 GCCCCACGTTGGGC 98362 >seq2244 Length=98991 Score = 93.3 bits (102), Expect = 9e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 83329 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 83270 Query 142563 CCCCACATCGGGCAGAAGT 142581 |||||| | |||| |||| Sbjct 83269 CCCCACGTTGGGCGCAAGT 83251 >seq1289 Length=182329 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 125115 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 125056 Query 142563 CCCCACATCGGGCAGA 142578 |||||| | |||| || Sbjct 125055 CCCCACGTTGGGCGGA 125040 >seq256 Length=584146 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 170795 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 170736 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 170735 GCCCCACGTTGGGC 170722 >seq3450 Length=45531 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 811 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 752 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 751 CCCCACGTTGGGC 739 >seq2686 Length=75061 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 67317 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 67258 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 67257 CCCCACGTTGGGC 67245 >seq2179 Length=103531 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 57502 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 57443 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 57442 CCCCACGTTGGGC 57430 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||| | |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 57185 AGCCCAGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 57126 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 57125 CCCCACGTTGGGC 57113 >seq2022 Length=136201 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 64758 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 64699 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 64698 CCCCACGTTGGGC 64686 >seq260 Length=798675 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 789593 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 789534 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 789533 CCCCACGTTGGGC 789521 >seq211 Length=1187333 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 188549 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 188490 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 188489 CCCCACGTTGGGC 188477 >seq1006 Length=223372 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 79112 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 79171 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 79172 CCCACGTTGGGC 79183 >seq427 Length=355340 Score = 87.8 bits (96), Expect = 4e-12 Identities = 67/77 (87%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 142048 CGCATGTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGT 142106 |||| ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||| Sbjct 295011 CGCA-GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGT 295069 Query 142107 TCGACCCCCGCCAGAGA 142123 |||| |||| |||||| Sbjct 295070 TCGAGTCCCGGCAGAGA 295086 >seq1612 Length=148028 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| Sbjct 102423 GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAG 102364 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 102363 TCCCGGCAGAGA 102352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027598372376305