Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13]
18,105 sequences; 801,711,499 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq1594 170 4e-37
seq619 163 5e-35
seq768 93.3 8e-14
seq541 84.2 4e-11
>seq1594
Length=294527
Score = 170 bits (188), Expect = 4e-37
Identities = 160/204 (78%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317
||| || |||||||| || |||||||| || || ||||| || | |||||||| | |||
Sbjct 188019 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTG 188078
Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377
||| ||||| || || || || || ||||| || || ||||| ||||| || || || ||
Sbjct 188079 CTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTT 188138
Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437
||||||||| ||| |||||||| | || || |||| |||||||||||| || ||
Sbjct 188139 GGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTTTTGCCGGT 188198
Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461
||||||||||||||| ||||||||
Sbjct 188199 GAGGGTCTTGACGAAGATCTGCAT 188222
Score = 168 bits (186), Expect = 1e-36
Identities = 165/210 (79%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||| ||| || |||||||| || |||||||| || || || || || | ||||||||
Sbjct 184050 ACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 184109
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
| |||||| || || || || || || || ||||| || || ||||| ||||| || ||
Sbjct 184110 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 184169
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTT 68431
||||| ||||||||| ||| |||||||| |||| || || |||| ||||||||| ||
Sbjct 184170 ATCTTGGCCTTGACGTTCTCAATGGTGTC-GCTGGGCTCAACCTCCAGGGTGATGGTCTT 184228
Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| ||||||||||||||||| ||||||||
Sbjct 184229 GCCGGTGAGGGTCTTGACGAAGATCTGCAT 184258
Score = 163 bits (180), Expect = 5e-35
Identities = 164/209 (78%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313
|||| || || ||||| ||||||||||| || || || || || || | |||||||| |
Sbjct 184279 CAAGATGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCCA 184338
Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373
|||||| ||||| || || || || || ||||| || || ||||| ||||| || || |
Sbjct 184339 GCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGA 184398
Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTT 68432
| || || |||||| ||| |||||||| ||| | ||| || |||| ||||||||||||
Sbjct 184399 TTTTGGCTTTGACGTTCTCAATGGTGTC-GCTGGGTTCCACCTCCAGGGTGATGGTTTTG 184457
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| |||||||||||||| || ||||||||
Sbjct 184458 CCGGTGAGGGTCTTGACAAAGATCTGCAT 184486
Score = 161 bits (178), Expect = 2e-34
Identities = 158/204 (77%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317
||| || || || ||||| |||||||| |||||||| || || | ||||| || | |||
Sbjct 183827 GTGGAGGGTAGATTCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCCTCCAGCTG 183886
Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377
||| ||||| || || || || || ||||| || || ||||| ||||| || || || ||
Sbjct 183887 CTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTT 183946
Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437
|||||||| ||| |||||||| | || ||||||| ||||||||| || || ||
Sbjct 183947 GGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCGGT 184006
Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461
||||||||||||||| ||||||||
Sbjct 184007 GAGGGTCTTGACGAAGATCTGCAT 184030
Score = 147 bits (162), Expect = 4e-30
Identities = 158/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||| ||| || ||||| ||||| |||||||| || || || || || | ||||||||
Sbjct 188242 ACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 188301
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
| |||||| ||||| || || || || || ||||| || || ||||| ||||| || ||
Sbjct 188302 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 188361
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
||||| ||||| || ||| |||||||| | || || || | ||||||||||||
Sbjct 188362 ATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTG 188421
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| |||||||| || || || ||||||||
Sbjct 188422 CCGGTGAGGGTTTTCACAAAGATCTGCAT 188450
>seq619
Length=304156
Score = 163 bits (180), Expect = 5e-35
Identities = 173/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293
|||||| | ||||| | |||| ||| || |||||||| || |||||||| || || ||
Sbjct 191817 TCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 191758
Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353
|| || | |||||||| | ||| || || || || || ||||| || ||||| || ||
Sbjct 191757 CAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGG 191698
Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413
||||||||| || || |||||||||||||| ||| ||| |||||||| | || ||
Sbjct 191697 AATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCAC 191638
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||| ||| ||||| || || ||||| || || ||||| ||||||||
Sbjct 191637 CTCCAGGGTAATGGTCTTCCCAGTGAGAGTTTTCACGAAAATCTGCAT 191590
>seq768
Length=308456
Score = 93.3 bits (102), Expect = 8e-14
Identities = 78/96 (81%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994
|||||||||| | ||||||||||| ||||| ||| |||||||||| ||| |||||
Sbjct 128841 CATGACGCCCATCCTCTGGTACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTC 128782
Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030
|| |||||| |||||||||||| || ||||||||
Sbjct 128781 CAGAGAAATGTTCTCCATGAAGTCGAACGGGTTCTC 128746
>seq541
Length=321934
Score = 84.2 bits (92), Expect = 4e-11
Identities = 106/143 (74%), Gaps = 2/143 (1%)
Strand=Plus/Plus
Query 31725 GTGTATTCGACAATCTCGGCACAAAGATTGCTGCCCGTGATGGTGCCGGCATTGGACTGC 31784
||||||||||| ||||| | || ||||||||| | |||||||||| ||| |||
Sbjct 160846 GTGTATTCGACGATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGG 160905
Query 31785 ATGTTCTTCACGTT-CACGCTGTCCTTGTTGAGCACGTAAGGCATGCCCGTCTCGATCTG 31843
|| ||||| ||| || || |||||||| ||||| ||| ||| | |||||||| ||||
Sbjct 160906 TTGGTCTTCCTGTTGCAGGC-GTCCTTGTAGAGCATGTACGGCGTACCCGTCTCTGTCTG 160964
Query 31844 CGTGATGATCATCGCATTCCAGA 31866
|| ||| || || | |||||
Sbjct 160965 CGACTCGATGATGGCGTACCAGA 160987
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921413825330600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |