Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1594 170 4e-37 seq619 163 5e-35 seq768 93.3 8e-14 seq541 84.2 4e-11 >seq1594 Length=294527 Score = 170 bits (188), Expect = 4e-37 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || |||||||| || |||||||| || || ||||| || | |||||||| | ||| Sbjct 188019 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTG 188078 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| ||||| || || || || || ||||| || || ||||| ||||| || || || || Sbjct 188079 CTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTT 188138 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 ||||||||| ||| |||||||| | || || |||| |||||||||||| || || Sbjct 188139 GGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTTTTGCCGGT 188198 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||||||| |||||||| Sbjct 188199 GAGGGTCTTGACGAAGATCTGCAT 188222 Score = 168 bits (186), Expect = 1e-36 Identities = 165/210 (79%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || |||||||| || |||||||| || || || || || | |||||||| Sbjct 184050 ACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 184109 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || || || || || ||||| || || ||||| ||||| || || Sbjct 184110 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 184169 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTT 68431 ||||| ||||||||| ||| |||||||| |||| || || |||| ||||||||| || Sbjct 184170 ATCTTGGCCTTGACGTTCTCAATGGTGTC-GCTGGGCTCAACCTCCAGGGTGATGGTCTT 184228 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||||||||||||||| |||||||| Sbjct 184229 GCCGGTGAGGGTCTTGACGAAGATCTGCAT 184258 Score = 163 bits (180), Expect = 5e-35 Identities = 164/209 (78%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || ||||| ||||||||||| || || || || || || | |||||||| | Sbjct 184279 CAAGATGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCCA 184338 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| ||||| || || || || || ||||| || || ||||| ||||| || || | Sbjct 184339 GCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGA 184398 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTT 68432 | || || |||||| ||| |||||||| ||| | ||| || |||| |||||||||||| Sbjct 184399 TTTTGGCTTTGACGTTCTCAATGGTGTC-GCTGGGTTCCACCTCCAGGGTGATGGTTTTG 184457 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||||||||||| || |||||||| Sbjct 184458 CCGGTGAGGGTCTTGACAAAGATCTGCAT 184486 Score = 161 bits (178), Expect = 2e-34 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || || || ||||| |||||||| |||||||| || || | ||||| || | ||| Sbjct 183827 GTGGAGGGTAGATTCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCCTCCAGCTG 183886 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| ||||| || || || || || ||||| || || ||||| ||||| || || || || Sbjct 183887 CTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTT 183946 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 |||||||| ||| |||||||| | || ||||||| ||||||||| || || || Sbjct 183947 GGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCGGT 184006 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||||||| |||||||| Sbjct 184007 GAGGGTCTTGACGAAGATCTGCAT 184030 Score = 147 bits (162), Expect = 4e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || ||||| ||||| |||||||| || || || || || | |||||||| Sbjct 188242 ACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 188301 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| ||||| || || || || || ||||| || || ||||| ||||| || || Sbjct 188302 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 188361 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| || ||| |||||||| | || || || | |||||||||||| Sbjct 188362 ATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTG 188421 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||||| || || || |||||||| Sbjct 188422 CCGGTGAGGGTTTTCACAAAGATCTGCAT 188450 >seq619 Length=304156 Score = 163 bits (180), Expect = 5e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||| | ||||| | |||| ||| || |||||||| || |||||||| || || || Sbjct 191817 TCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 191758 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | |||||||| | ||| || || || || || ||||| || ||||| || || Sbjct 191757 CAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGG 191698 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||||||||| || || |||||||||||||| ||| ||| |||||||| | || || Sbjct 191697 AATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCAC 191638 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||| ||||| || || ||||| || || ||||| |||||||| Sbjct 191637 CTCCAGGGTAATGGTCTTCCCAGTGAGAGTTTTCACGAAAATCTGCAT 191590 >seq768 Length=308456 Score = 93.3 bits (102), Expect = 8e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||||||| | ||||||||||| ||||| ||| |||||||||| ||| ||||| Sbjct 128841 CATGACGCCCATCCTCTGGTACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTC 128782 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 || |||||| |||||||||||| || |||||||| Sbjct 128781 CAGAGAAATGTTCTCCATGAAGTCGAACGGGTTCTC 128746 >seq541 Length=321934 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 31725 GTGTATTCGACAATCTCGGCACAAAGATTGCTGCCCGTGATGGTGCCGGCATTGGACTGC 31784 ||||||||||| ||||| | || ||||||||| | |||||||||| ||| ||| Sbjct 160846 GTGTATTCGACGATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGG 160905 Query 31785 ATGTTCTTCACGTT-CACGCTGTCCTTGTTGAGCACGTAAGGCATGCCCGTCTCGATCTG 31843 || ||||| ||| || || |||||||| ||||| ||| ||| | |||||||| |||| Sbjct 160906 TTGGTCTTCCTGTTGCAGGC-GTCCTTGTAGAGCATGTACGGCGTACCCGTCTCTGTCTG 160964 Query 31844 CGTGATGATCATCGCATTCCAGA 31866 || ||| || || | ||||| Sbjct 160965 CGACTCGATGATGGCGTACCAGA 160987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921413825330600