Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq406 641 7e-179 seq541 113 9e-20 seq768 105 1e-17 seq120 100 5e-16 >seq406 Length=364117 Score = 641 bits (710), Expect = 7e-179 Identities = 1114/1600 (70%), Gaps = 56/1600 (4%) Strand=Plus/Minus Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC 244069 || || |||| |||| |||| | | ||| | |||||||||||||| |||||| Sbjct 267972 GATCCGTTGTTTGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCA---CGCTCC 267916 Query 244070 ---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGC 244126 || ||| || ||||| ||| || | ||| |||||||| |||||||| | ||| Sbjct 267915 GTCAGGTCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCTGCGG 267856 Query 244127 TGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTG 244186 ||||| ||||||| || || ||||||| ||| |||||||||| ||||| || ||| Sbjct 267855 GTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTG 267796 Query 244187 CTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGG 244246 ||| || |||||||||| || |||||| ||||||||||||||||| | ||| Sbjct 267795 GACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTC 267736 Query 244247 AGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATG 244306 | ||| ||||||||||||| | | | ||| || | |||||||| Sbjct 267735 TCCTTCAGCAGCTTCCAGTCCCACAGGTCGG--------TCG-GTGTCTTCTCCCACATG 267685 Query 244307 TCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCG 244366 || |||| || | |||||||||| ||| ||||||||| ||| |||||| ||| | Sbjct 267684 TCGTACTGGAGGATGCCCTTGCTGATGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGA-G 267626 Query 244367 CGCTG-GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCAT 244425 | ||| ||| || | ||||| | || |||||||||| ||||||||||||||||||| Sbjct 267625 CTCTGCGGCGAGTTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTG 267566 Query 244426 CTTGTTCATGTCGCGGGCCTT-GCCGCAGGTGAAGGGGATGCC-CATCATCATGAAGACG 244483 |||| | | || || ||| | || ||| || ||| | ||||| |||||| | Sbjct 267565 GATGTTGA-GCAGCTGGGCTTCGGGGCTTTCGAACGG-ATGTCGCATCAGGATGAAGGCA 267508 Query 244484 TCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCT 244543 |||||||| ||||| |||||||| ||||| || ||||| ||||||||||| | |||| Sbjct 267507 TCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGACGTCTCGGCT 267448 Query 244544 TCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGG 244603 ||||| || ||||| | ||| |||||| | |||||||||||| ||| | | Sbjct 267447 TCGGGGACCGGGTAGTAATTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTG 267388 Query 244604 ACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTC 244663 |||| ||||||| || |||||| | || || || ||| | | Sbjct 267387 GTGACGGAGGCCAGCTTCTTGAAGTCGAA-----AG------TCCGCTCTGGCG----TG 267343 Query 244664 ACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTG 244723 || || ||||||||||| | |||||||||||||||||||||||| ||| | ||||| Sbjct 267342 ACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTG 267283 Query 244724 TACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTG 244783 |||| || | ||| ||||||||||| ||||| |||||||||||||||| ||| || ||| Sbjct 267282 TACTCCACCACCTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTG 267223 Query 244784 GACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCG 244843 ||| |||||| |||||||||||||||||| ||||| |||||| ||| ||||| Sbjct 267222 CTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGAC 267163 Query 244844 ACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCC 244903 ||| || | || |||||| | | ||||| ||| ||| || | || || | Sbjct 267162 TCGATGATGGCGTACCAGAGCTGCTGCGCCTTCACCACCCTCTTCACCCTCCCTTCCTTC 267103 Query 244904 TCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCAC 244963 || || | |||||| || ||||||||| |||||| |||||| || || || ||| Sbjct 267102 TCATATCTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACAC 267043 Query 244964 GACGCCGGG-CACATGAGACTCCA---CTCGCCGCCGTCCTTGACCCTCTGCATGAAGAG 245019 ||| ||| ||||| | ||| || | || ||| || |||| |||||| || Sbjct 267042 -TCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTTTCC---ACTCTCTTCATGAACAG 266987 Query 245020 GTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTT 245079 ||| |||||||| | ||| | ||| ||||| |||| |||||||| ||| || ||||| Sbjct 266986 GTCCGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTT 266927 Query 245080 CTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAG 245139 |||| ||||||||| ||||| || ||||||| |||||| || |||| ||| | || | Sbjct 266926 CTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGTTCCAGGTACATGGCAAA 266867 Query 245140 GGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGA 245195 ||| ||||| | ||||||||| |||||||| | | | ||||| |||| | | Sbjct 266866 GGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGA----CGTAGCGAGCCGTGTTGTTGTAAA 266811 Query 245196 TGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCT 245255 | ||| | || || | ||||| |||| |||||||||||| |||||| ||| Sbjct 266810 CTCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGCCGGCAATGTAGCTTCCCG 266751 Query 245256 TGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGC 245315 | | || | ||| | | || ||| | || || ||| |||||| ||||| |||| Sbjct 266750 TCGATCGGATGCAGCTCACCGCCACGCCGATCCCCCCAGCGGACTTGGAAATGAGCGCGC 266691 Query 245316 AGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGC 245375 | ||| | |||||| ||||| || |||||||| ||||||| ||||| |||| Sbjct 266690 ACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCAAGCAGGAAGC 266631 Query 245376 AGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAA 245435 || ||||||||| ||| | | | | | |||||| || || || ||||||||| | Sbjct 266630 AGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGA 266571 Query 245436 AGTAGCGGCT-CGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCG-CCGTG 245493 | | | || ||| |||| ||| |||| || |||||| ||| | ||| ||||| Sbjct 266570 ACCA-CTTCTCCGACAGGAGGTTGTAGGTCTCGATGGCAGCGTCAATG-TCTCGCCCGTG 266513 Query 245494 GATCTGCAGGGCGCACCTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCTCGGGTCC 245553 |||| | | ||||||||| ||||||| ||| |||| | | || Sbjct 266512 GATCCCAACCGACACCCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTCCCGTTGAT 266453 Query 245554 CTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAG 245593 ||| |||| |||||||||||| || |||||||| || ||| Sbjct 266452 CTTCAGCAGGTAGGAGCGCTCCAGAGTCTTGAAACCGAAG 266413 >seq541 Length=321934 Score = 113 bits (124), Expect = 9e-20 Identities = 132/176 (75%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 244705 CACCTCCTC-CGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 |||||| || | | ||| |||| | ||| ||||| |||||||| || ||| ||||||||| Sbjct 160830 CACCTCATCTCTACTTG-TGTATTCGACGATCTCTGTGCAGAGATTGCTGGACTTGATGG 160888 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 ||||||| | || || |||| ||| ||||||||||||||||||||||||| | ||| Sbjct 160889 TGCCCAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCG 160948 Query 244824 CCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACC 244879 || ||||| ||| | ||| || | || |||||| | | |||||| ||| Sbjct 160949 TACCCGTCTCTGTCTGCGACTCGATGATGGCGTACCAGAGCTGCTGAGCCTTCACC 161004 Score = 111 bits (122), Expect = 3e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || ||| |||||||| || ||||| | ||| ||| ||||| |||| |||||||| || Sbjct 161314 CTTCATAAAGAGGTCTGGAATCCACAAGGCAAAGAACAGGTCTCTGGCTCTCTGCTCTTC 161373 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 || ||||||||| ||||||||||||| ||||| ||||| | ||||| ||||||| Sbjct 161374 TTTACCCGTGTTCTTCTTCAGCTCCAAAAACTCAAACACGTCAGCATGCCACGGCTCCAG 161433 Query 245128 GTAGACAGCGAGGGCGCCGGG 245148 ||| |||| || ||| || || Sbjct 161434 GTACACAGAGAAGGCCCCTGG 161454 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 |||||||||||||| || ||||| | ||| ||| | |||||| || || ||| ||| Sbjct 159202 ACCTGAAACTCTCCTGAGAGCACCCTGCGAGTGTAAAAGTTGCTTGTGTACGCCTCAATG 159261 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||| ||||| ||||| || ||| || || ||||| || | || |||||| Sbjct 159262 GACTCATTGTTACCCAGGATCTGGGCAGTGGAAGCTGTGGGCATCGGGGCCAAAAGCAGA 159321 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 |||||||| || |||||||| Sbjct 159322 CTGTTCCTTACACCGTGCCT 159341 >seq768 Length=308456 Score = 105 bits (116), Expect = 1e-17 Identities = 107/137 (78%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| ||||| | ||||| ||||| ||||||||||| || | |||||| Sbjct 127828 GGAGAGAGAGTGGTGGCCTTCGCTGCCGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCC 127887 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 ||||||||||||| ||| ||| ||| | |||||| || || |||||| ||||| || Sbjct 127888 GCCATCTTCTGGCTGAAGAAGAGAGGCCT-GATGCCTGGCCTGACCTTCAGCAACGAGCT 127946 Query 42815 CATCAGCAGGGACGAGG 42831 |||||| | ||||||| Sbjct 127947 CATCAGTCGAGACGAGG 127963 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/126 (75%), Gaps = 6/126 (5%) Strand=Plus/Plus Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 |||| | | ||||||||| ||||| | || ||||||||||||||||| ||||| Sbjct 127459 TTCACGCAGGAGGTGCAGGTGACAGAGGCCAGGTGTTTCTACGGCTTCCAGATCGCCATG 127518 Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCC 42593 |||||| | ||||||||| |||| || ||||||| |||| |||||| ||||||| Sbjct 127519 GAGAACATCCACTCTGAGATGTA---CAGCCTGCTCATCGACACCTACATCAAGGATCCC 127575 Query 42594 GTCGAG 42599 |||| Sbjct 127576 AGCGAG 127581 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 ||| |||||||| ||||||||||| || ||||||| ||||||||||| || |||||||| Sbjct 128751 CCCGTTCGACTTCATGGAGAACATTTCTCTGGAGGGGAAGACCAACTTCTTTGAGAAGCG 128810 Query 43130 CGTCGCCGACTACCAG 43145 |||| || |||||| Sbjct 128811 GGTCGGGGAGTACCAG 128826 >seq120 Length=551038 Score = 100 bits (110), Expect = 5e-16 Identities = 106/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||| | || || || || | || || ||||| ||||||||||| ||| | ||||| Sbjct 520272 GGGGAGCGTCTTGTGGCTTTCGCAGCAGTGGAGGGGATCTTCTTCTCAGGCTCATTCGCT 520331 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 | |||| |||||| ||| ||| ||| || ||||| || || |||| ||| |||||||| Sbjct 520332 GCTATCTACTGGCTGAAGAAGAGAGGCCTC-ATGCCAGGCCTTACCTACTCCAACGAACT 520390 Query 42815 CATCAGCAGGGACGAGG 42831 ||| ||||||||||||| Sbjct 520391 CATTAGCAGGGACGAGG 520407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944125484234800