Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13]
18,105 sequences; 801,711,499 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq1594 129 6e-25
seq248 98.7 1e-15
seq692 95.1 1e-14
seq547 93.3 5e-14
seq2560 91.5 2e-13
seq4019 89.7 6e-13
>seq1594
Length=294527
Score = 129 bits (142), Expect = 6e-25
Identities = 145/194 (75%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
|| ||||| |||||||| |||| ||| || || | || || |||||||| || || ||
Sbjct 184296 TCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAG 184355
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137
|| || | ||||||||| | || | || |||||| ||| |||||| ||||| ||
Sbjct 184356 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCTTTGACGTTC 184415
Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197
| | |||||||| | |||||| || | |||||||||||||| || || ||||| |||
Sbjct 184416 TCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACA 184475
Query 42198 AAGATTTGCATTTT 42211
||||| ||||| ||
Sbjct 184476 AAGATCTGCATGTT 184489
Score = 98.7 bits (108), Expect = 1e-15
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| |||| || || || | || || |||||||| || || ||
Sbjct 188031 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAA 188090
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| || | ||||||||| | || | || |||||| ||| |||||| |||| |
Sbjct 188091 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTT 188150
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | | ||||| || | || || || | |||||||||||||| || || ||||| ||
Sbjct 188151 CTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGAC 188210
Query 42197 AAAGATTTGCAT 42208
||||| |||||
Sbjct 188211 GAAGATCTGCAT 188222
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
|| || || | ||| | |||| || | |||| || || || || ||||| |||| |
Sbjct 188224 CCACCCCTGAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGAC 188283
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
|| || || | || || |||||||| || || || || || | ||||||||| | ||
Sbjct 188284 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 188343
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161
| || |||||| ||| ||| || || | || | | ||||| || | |||||
Sbjct 188344 ATGCCCTCCTTATCCTGGATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCCACC 188403
Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211
|| | |||||||||||||| || || || || |||||||| ||||| ||
Sbjct 188404 TCAAGGGTGATGGTTTTGCCGGTGAGGGTTTTCACAAAGATCTGCATCTT 188453
>seq248
Length=436962
Score = 98.7 bits (108), Expect = 1e-15
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061
||||||||| || | | |||||||||| ||||||||||||||||||||| ||||||||
Sbjct 296153 ATTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 296212
Query 57062 CACTATACTACCGAGGA 57078
|||||||||| ||||||
Sbjct 296213 CACTATACTAACGAGGA 296229
>seq692
Length=338404
Score = 95.1 bits (104), Expect = 1e-14
Identities = 76/92 (83%), Gaps = 5/92 (5%)
Strand=Plus/Minus
Query 56992 TTTATGAAAAAT-----TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACA 57046
|||| ||||||| || |||| || | | |||||||||| ||||||||||||||||
Sbjct 324998 TTTAAGAAAAATAAATGTTACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACA 324939
Query 57047 GGCGGACATACTCACCACTATACTACCGAGGA 57078
||||| |||||||||||||||||| ||||||
Sbjct 324938 GGCGGGGATACTCACCACTATACTAACGAGGA 324907
>seq547
Length=667685
Score = 93.3 bits (102), Expect = 5e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 272575 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 272634
Query 57067 TACTACCGAGGATTGA 57082
||||| |||||| |||
Sbjct 272635 TACTAACGAGGAGTGA 272650
Score = 91.5 bits (100), Expect = 2e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 381656 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 381715
Query 57067 TACTACCGAGGATTG 57081
||||| |||||| ||
Sbjct 381716 TACTAACGAGGAATG 381730
Score = 86.0 bits (94), Expect = 7e-12
Identities = 72/88 (82%), Gaps = 3/88 (3%)
Strand=Plus/Plus
Query 56994 TATGAAAAATTTT---CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCG 57050
||||||||| || |||| || | | ||||||| || |||||||| |||||||||||
Sbjct 431792 TATGAAAAAGTTGTGCCTCCCCGTCGGGGAATCGAATCCCGGTCTCCCACGTGACAGGCG 431851
Query 57051 GACATACTCACCACTATACTACCGAGGA 57078
| |||||||||||||||||| ||||||
Sbjct 431852 GGGATACTCACCACTATACTAACGAGGA 431879
>seq2560
Length=140597
Score = 91.5 bits (100), Expect = 2e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063
|| |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 97922 TTACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 97863
Query 57064 CTATACTACCGAGGA 57078
|||||||| ||||||
Sbjct 97862 CTATACTAACGAGGA 97848
Score = 89.7 bits (98), Expect = 6e-13
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061
|| |||||| || | | ||| |||||| ||||||||||||||||||||| ||||||||
Sbjct 80759 ATATTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 80700
Query 57062 CACTATACTACCGAGGA 57078
|||||||||| ||||||
Sbjct 80699 CACTATACTAACGAGGA 80683
Score = 89.7 bits (98), Expect = 6e-13
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061
|| |||||| || | | ||| |||||| ||||||||||||||||||||| ||||||||
Sbjct 95160 ATATTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 95219
Query 57062 CACTATACTACCGAGGA 57078
|||||||||| ||||||
Sbjct 95220 CACTATACTAACGAGGA 95236
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 97285 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 97226
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 97225 TACTAACGAGGA 97214
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | ||| |||||| ||||||||||||||||||||| |||||||||||||
Sbjct 73260 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 73201
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 73200 TACTAACGAGGA 73189
Score = 86.0 bits (94), Expect = 7e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061
|| |||||| || | | ||| |||||| ||||||||||||||||| ||| ||||||||
Sbjct 81252 ATATTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGACGGGGATACTCAC 81193
Query 57062 CACTATACTACCGAGGA 57078
|||||||||| ||||||
Sbjct 81192 CACTATACTAACGAGGA 81176
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | ||| |||||| ||||||||||||||||||||| |||||||||||||
Sbjct 83621 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 83562
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 83561 TACTAACGAGGA 83550
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | ||| |||||| ||||||||||||||||||||| |||||||||||||
Sbjct 95589 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 95648
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 95649 TACTAACGAGGA 95660
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | ||| |||||| ||||||||||||||||||||| |||||||||||||
Sbjct 96550 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 96491
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 96490 TACTAACGAGGA 96479
Score = 84.2 bits (92), Expect = 2e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064
|||||| || | | ||| |||||| ||||||||||||||||||||| |||||||||||
Sbjct 86011 TTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 86070
Query 57065 TATACTACCGAGGA 57078
|||||| ||||||
Sbjct 86071 CATACTAACGAGGA 86084
>seq4019
Length=31626
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 8579 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 8520
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 8519 TACTAACGAGGA 8508
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543089864153200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |