Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq406 259 5e-64 >seq406 Length=364117 Score = 259 bits (286), Expect = 5e-64 Identities = 983/1524 (65%), Gaps = 39/1524 (3%) Strand=Plus/Plus Query 93733 TTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCCGAGCGACCG 93792 ||||| ||||||||| || ||||| || ||||| | || | || ||||||| ||| Sbjct 266420 TTCAAGACTCTGGAGCGCTCCTACCTGCTGAAGATCAACGGGAAAGTGGCCGAGCGGCCG 266479 Query 93793 CACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACAT-GCCGAATGTTTT 93851 || || |||| ||| | || | | ||||| ||||| | ||||| | || || | Sbjct 266480 CAGCACATGCTCATGAGGGTGTCGGTTGGGATCCACGGGCGAGACATTGACGC-TGCCAT 266538 Query 93852 GCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACCCCGACCCTGTTCAA 93911 | | | || | || ||| ||| ||| ||| ||| | |||||||| ||||| Sbjct 266539 CGAGACCTACAACCTCCTGTCGGAGAAGTGGTTCACCCACGCCTCTCCGACCCTCTTCAA 266598 Query 93912 CGCGGGGACC--CCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGAC 93969 ||| |||||| |||| || ||| |||| || |||||| | | | |||| |||| Sbjct 266599 CGCCGGGACCAACCGG--CCGCAGCTGTCCAGCTGCTTCCTGCTTGCCATGAAGGACGAC 266656 Query 93970 TCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGG 94029 |||| || || | ||||| ||| ||| | || ||| ||| || || | ||| ||| Sbjct 266657 AGCATCGAAGGCATCTACGACACCCTGAAGCAGTGCGCGCTCATTTCCAAGTCCGCTGGG 266716 Query 94030 GGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAAT 94089 || ||||| | || | | | || | | ||| |||||| ||| ||||| Sbjct 266717 GGGATCGGCGTGGCGGTGAGCTGCATCCGATCGACGGGAAGCTACATTGCCGGCACCAAC 266776 Query 94090 GGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTG 94149 |||| ||||||||| | ||||| ||||| | || | ||||||| |||| |||||||| Sbjct 266777 GGCAACTCCAACGGATTGGTCCCGATGCTGAGAGTTTACAACAACACGGCTCGCTACGTC 266836 Query 94150 GACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCG 94209 |||||||| || | ||| || | || || | || || || || |||||| Sbjct 266837 GACCAGGGCGGCAACAAGAGACCCGGGGCCTTTGCCATGTACCTGGAACCGTGGCACTTC 266896 Query 94210 GACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGA 94269 |||||| | ||| | || ||| |||||| || || || | |||| |||||| Sbjct 266897 GACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAGGAGCAGAGAGCCAGA 266956 Query 94270 GACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCC 94329 ||||| |||||||| | ||| | || ||||| || ||||| | || || | ||| Sbjct 266957 GACCTTTTCTACGCCTTGTGGATCCCGGACCTGTTCATGAAGAGAGTGGAAAGCAACCAG 267016 Query 94330 GCCTGGAGTCTTT--TTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGC 94387 | |||| || || | ||||||| || ||||| || ||| ||| || ||| | Sbjct 267017 GACTGG--TCCTTGATGTGTCCCAGCGAGTGTCCTGGGCTGGACGAGTGCTGGGGAGAGG 267074 Query 94388 GTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGAAGGTTATGGATG 94447 || || | | || | | || || | | || | || | || ||| || | | Sbjct 267075 AGTTCGAGAAGCTCTACACCAGATATGAGAAGGAAGGGAGGGTGAAGAGGGTGGTGAAGG 267134 Query 94448 CTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCT 94507 | | |||| ||| | ||| | || ||| || || || ||||||||||| Sbjct 267135 CGCAGCAGCTCTGGTACGCCATCATCGAGTCCCAGACCGAAACCGGGACGCCCTACATGC 267194 Query 94508 TGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCT 94567 | | ||||||| || |||| ||| |||||||||| |||| || ||||| || Sbjct 267195 TCTACAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCATCAAATGCA 267254 Query 94568 CGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACC 94627 || || ||||| ||| | || ||||| || ||||||| | || || || |||| Sbjct 267255 GCAACCTCTGCACAGAGGTGGTGGAGTACACCAGCAAGGACGAGGTGGCCGTCTGCAACC 267314 Query 94628 TGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACGTCTACTGCTTCGTTCG 94687 ||| ||||||| ||| | || | || || | ||| || ||| |||| Sbjct 267315 TGGCCTCCATCGCCCT--CAACAT--GTACGTCACGCCAGAGCGG--ACT------TTCG 267362 Query 94688 ATCTGGAGGAGCTTGTGAACTTCGCGGGAAGG--ATGGTCTTGAACCTGAACAGGGTAAT 94745 | | || |||| | | || | |||| || || ||||| |||| | | || Sbjct 267363 ACTTCAAGAAGCTGGCCTCCGTCACC--AAGGTAATCGTGAAAAACCTCAACAAGATCAT 267420 Query 94746 CGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAAGCATCGGCCCAT 94805 ||||| || | |||||| ||||| || || |||| || ||| | || |||| || Sbjct 267421 CGACATCAATTACTACCCGGTCCCCGAAGCCGAGACGTCCAACAAGCGCCACAGGCCGAT 267480 Query 94806 CGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGTCTGCCCTACGACTC 94865 ||| ||||||||||||||| | || || || | | ||||||| | || | ||| Sbjct 267481 CGGGATCGGCGTCCAGGGTCTGGCCGATGCCTTCATCCTGATGCGACATCCGTTCGAAAG 267540 Query 94866 TGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTTATTACGGGGCCATGAA 94925 ||| || | | || | | || ||||| | ||| || ||| ||| || | Sbjct 267541 CCCCGAAGCCCAGCTGCTCAACATCCAGATCTTCGAGACCATCTACCACGCCGCCCTGGA 267600 Query 94926 A-CAATCCGTCCACTTGGC-CAGATCGGACGGCGGGCCACACGAATCGTTCCGCGGATCG 94983 | | | | ||| | | |||| | ||| || |||| ||| | || ||| Sbjct 267601 GGCCAGCTGCGAACTCGCCGCAGAGCT-----CGGCCCCTACGAGACGTACGAGGGCTCG 267655 Query 94984 CCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTAC 95043 ||| | ||||||| | |||| |||| | |||| || || | | |||| Sbjct 267656 CCCATCAGCAAGGGCATCCTCCAGTACGACATGTGGGAGAAGACACCGACCGACCTGTGG 267715 Query 95044 GACTGGGAAGCT-CT--ACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTT 95100 |||||| ||||| || | | | ||| ||||||||| |||| ||| ||||| Sbjct 267716 GACTGG-AAGCTGCTGAAGGAGAAGATCGC--CAAACACGGCGTGAGGAACAGCCTGCTG 267772 Query 95101 GTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAA 95160 |||| |||||||||||||| ||||| || |||||||| |||||||||||||| |||| Sbjct 267773 CTGGCGCCCATGCCCACGGCGTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAG 267832 Query 95161 CCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAAC 95220 | | |||| |||| | |||| | | ||||||| |||| || |||| || ||||| Sbjct 267833 GCGTACACCAGCAACATCTACACCCGCAGGGTGCTGTCCGGAGAGTTCCAGATCGTCAAC 267892 Query 95221 AAGCACCTCCTACGGGACCTGACG 95244 |||||||| |||||||||| Sbjct 267893 CCTCACCTCCTCAAGGACCTGACG 267916 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 93331 GTCATGTTCGACAAGATCACTACCAGGGTGCGCAAACTTTGCGAGGGTCTGGACTCTGAC 93390 ||||||||||| || ||||| || | | | || |||||| | || ||| || | ||| Sbjct 266015 GTCATGTTCGATAAAATCACCTCCCGCATCCAGAAGCTTTGCTACGGCCTGAACCCGGAC 266074 Query 93391 TTCGTGGATCCCGTCGAGGTCACCATGAGAGTGAATCAGGGAATATATGCCGGGGTCACA 93450 || |||||||| | || ||||||||| |||| ||||| | || ||| ||||| Sbjct 266075 TTTGTGGATCCAGCTCAGATCACCATGAAGGTGATCCAGGGCTTGTACAGCGGCGTCACC 266134 Query 93451 ACTGTCGAGCTCGATCTTCTGGCCGCGGAGACTTGTGCCTTCATGAGTACGAATCACCCG 93510 || || ||||| || || || ||||||| ||| | ||| || || ||||| Sbjct 266135 ACCGTGGAGCTTGACACGCTAGCGGCGGAGATCGCGGCCACCCTGACGACCAAACACCCC 266194 Query 93511 GACTACTCCATTTTGGCTGC 93530 |||||| |||| |||| || Sbjct 266195 GACTACGCCATCCTGGCCGC 266214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494611237955800