Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq406 275 6e-69 seq619 96.9 3e-15 seq541 86.0 6e-12 >seq406 Length=364117 Score = 275 bits (304), Expect = 6e-69 Identities = 955/1462 (65%), Gaps = 40/1462 (3%) Strand=Plus/Minus Query 153075 TTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTC 153134 ||||| ||| | | || | ||| ||||| ||||| || || || || |||| || || Sbjct 267846 TTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTG 267787 Query 153135 GGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAAC 153194 |||||| ||||| || || |||| || |||||| || | ||||||| | Sbjct 267786 GGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGC 267727 Query 153195 GCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCT 153254 || ||| |||||||| | | ||||||| | ||||||||||||||| | | || Sbjct 267726 AGCTTCCAGTCCCACAGGTCGGTCGGTGTCTTCTCCCACATGTCGTACTGGAGGATGCCC 267667 Query 153255 CGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTG-GGCCAGTTCGCA 153313 ||| ||| ||| | |||| |||| |||| || || ||| |||||||| Sbjct 267666 TTGCTGATGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGA-GCTCTGCGGCGAGTTCGCA 267608 Query 153314 GCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGC 153373 ||| ||||| || ||| | | ||| ||||| ||| ||| || | ||||| | || Sbjct 267607 GCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGGGC 267548 Query 153374 TTCTTCGCTCTCGTACGGCATG-CGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATAC 153432 ||| ||| ||| |||| ||| |||| ||| | ||||| |||||||||||||||| | Sbjct 267547 TTCGGGGCTTTCGAACGG-ATGTCGCATCAGGATGAAGGCATCGGCCAGACCCTGGACGC 267489 Query 153433 CGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTC-GCTATGGGATAGTGA 153491 ||| ||||| || | || || |||| || |||| || | | || |||| | Sbjct 267488 CGATCCCGATCGGCCTGTGGCGCTTGTTG-GACGTCTCGGCTTCGGGGACCGGGTAGTAA 267430 Query 153492 TTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTC 153551 ||| ||||| || ||||||||||| ||| | || || || | | || ||| Sbjct 267429 TTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTC 267370 Query 153552 TCGAAATCATAGGTCATTTC-GTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAG 153610 | ||| || | ||| || | || |||| ||| || | ||| || || ||||| Sbjct 267369 TTGAAGTCGAAAGTCCGCTCTGGCGTGACGTA--CAT--GTTGAGGGCGATGGAGGCCAG 267314 Query 153611 ATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCT 153670 || ||||||||| ||| || | | |||||| ||| | ||| | |||||||||||| Sbjct 267313 GTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCTGTGCAGAGGTTGCT 267254 Query 153671 GCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAG 153730 |||||| ||| ||||| || ||||| ||||| || | ||||| ||||| ||| |||| Sbjct 267253 GCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAG 267194 Query 153731 CATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTA-TGCAGGTCCTGCG 153789 |||||| || ||||| ||| || | |||| ||| | || || | ||||| Sbjct 267193 CATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGAT-GGCGTACCAGAGCTGCTGCG 267135 Query 153790 C--TC-GCACCCGCTGCCGATAGCGGCCC-TCGCTCTCGTATCGCTCGTACAGTCGCTCA 153845 | || ||||| || | | | ||| || |||| |||| ||| || ||| Sbjct 267134 CCTTCACCACCCTCTTC----ACCCTCCCTTCCTTCTCATATCTGGTGTAGAGCTTCTCG 267079 Query 153846 AACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACT-GATGCGGACACATCAGCGACCA 153904 ||||| || || |||| ||| | || || ||||||| | || |||||||||| ||||| Sbjct 267078 AACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACACTCGCTG-GGACACATCAAGGACCA 267020 Query 153905 CATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAG 153964 | || | | || | ||||||||| ||||| | ||| | ||||| | || Sbjct 267019 GTCCTGGTTGCTTTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGCGTAGAAAAG 266960 Query 153965 GTCGC--GCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGCTATAG 154022 ||| | || | ||| |||||| || |||| ||||| | || | | | Sbjct 266959 GTCTCTGGCTCTCTGC--TCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAAC 266902 Query 154023 ATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACC---TTTACGCTTTCCGCCC 154079 | |||| |||||| ||||| | ||| | ||| | ||| || | | || |||||| Sbjct 266901 ACGTCGAAGTGCCACGGTTCCAGGTACATGGCAAAGGCCCCGGGTCTCTTGTTGCCGCCC 266842 Query 154080 TGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCG 154139 || ||||||| ||| || | |||||| | || | || ||| || ||| ||| | | | Sbjct 266841 TGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCGTTGGAG 266782 Query 154140 GTGCCGTTGGT--CG--AATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAAC 154195 |||||||||| || ||| | ||| | | || | ||| | ||| || Sbjct 266781 TTGCCGTTGGTGCCGGCAATGTAGCTTCCCGTCGATCGGATGCAGCT----CACCGCCAC 266726 Query 154196 GCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCC 154255 ||| || || || || |||| || ||| ||||| | ||| || ||||||||| Sbjct 266725 GCCGATCCCCCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCC 266666 Query 154256 GTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGT 154315 |||||||| ||||| | | | |||| ||| || ||| ||||| | || Sbjct 266665 TTCGATGCTGTCGTCCTTCATGGCAAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGT 266606 Query 154316 TCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTA 154375 || || |||||||| ||| ||||| || ||| || | || | | ||| Sbjct 266605 CCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGTA 266546 Query 154376 CGTTTCGATGGCGTCTTCGATATCATCG-CCGTGAATGCCGAGCGCGACGCGCATGAGCA 154434 || |||||||| | || || || ||| ||||| || || | || || | |||||||| Sbjct 266545 GGTCTCGATGGCAGCGTCAATGTC-TCGCCCGTGGATCCCAACCGACACCCTCATGAGCA 266487 Query 154435 TGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGG 154494 |||||||||| || ||||| ||| | || ||||||| || || || || | Sbjct 266486 TGTGCTGCGGCCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCCAGAG 266427 Query 154495 TTTTGTAACCGAAATACTTGTA 154516 | ||| ||||||| | ||||| Sbjct 266426 TCTTGAAACCGAAGAAGTTGTA 266405 >seq619 Length=304156 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || || || || || ||||| || | | Sbjct 191783 GACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCA 191724 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| ||||| || |||||||| || ||| | |||| || | Sbjct 191723 AAGATCAGTCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC-TGAATCTTTGCCTTCAC 191665 Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | |||||| | | ||||||||| | || | || || ||||| |||||||| Sbjct 191664 GTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTCTTCCCAGTGAGAGTTTT 191605 Query 138600 TACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 191604 CACGAAAATCTGCAT 191590 >seq541 Length=321934 Score = 86.0 bits (94), Expect = 6e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||| | |||||||| | |||||| |||||| | || ||| ||||| ||||||||| | Sbjct 160847 TGTATTCGACGATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGT 160906 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739 || | || | ||||| ||||| ||| ||||||||||||| Sbjct 160907 TGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGG 160946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496150089615600