Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq406 181 1e-40 seq541 95.1 1e-14 seq619 93.3 4e-14 seq1594 87.8 2e-12 >seq406 Length=364117 Score = 181 bits (200), Expect = 1e-40 Identities = 891/1400 (64%), Gaps = 36/1400 (3%) Strand=Plus/Plus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 || || ||||| || || || ||||||||| | || | | || | ||||| || Sbjct 266462 AAAGTGGCCGAGCGGCCGCAGCACATGCTCATGAGGGTGTCGGTTGGGATCCACGGGCGA 266521 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 ||||| || || | ||| || ||| | | |||| | || | ||||| ||||| Sbjct 266522 GACATTGACGCTGCCATCGAGACCTACAACCTCCTGTCGGAGAAGTGGTTCACCCACGCC 266581 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 ||| || | ||| |||||| || || ||| ||| |||| || || |||| Sbjct 266582 TCTCCGACCCTCTTCAACGCCGGGACCAACCGGCCGCAGCTGTCCAGCTGCTTCCTGCTT 266641 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137 || || || ||||||||| || ||||| || || || | |||||| | ||| Sbjct 266642 GCCATGAAGGACGACAGCATCGAAGGCATCTACGACACCCTGAAGCAGTGCGCGCTCATT 266701 Query 123138 TCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAG-GCCGCGGAAGCCG 123196 ||||| | | || || || |||||| ||| | | | || | || |||||| Sbjct 266702 TCCAAGTCCGCTGGGGGGATCGGCGTGGCGGTGAGCTGCATCCGATCGACG-GGAAGCTA 266760 Query 123197 CATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAA 123256 ||| ||||| |||| | | || ||| | | | |||||| |||||||||| || Sbjct 266761 CATTGCCGGCACCAACGGCAACTCCAACGGATTGGTCCCGATGCTGAGAGTTTACAACAA 266820 Query 123257 CGCCGTGCGGCACGTCGACCAGGGCGGCAAACGCAAA---GGCGCGATGGCGATCTATCT 123313 | | | || ||||||||||||||||||| | | || || | || || || || Sbjct 266821 CACGGCTCGCTACGTCGACCAGGGCGGCAACAAGAGACCCGGGGCCTTTGCCATGTACCT 266880 Query 123314 AGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGA 123373 |||||||||||| | || |||| ||| || | | | || |||| || ||| Sbjct 266881 GGAACCGTGGCACTTCGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGA 266940 Query 123374 AGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACG 123433 || ||| |||| | || | || ||||| || ||| | || || |||| ||| | Sbjct 266941 GGAGCAGAGAGCCAGAGACCTTTTCTACGCCTTGTGGATCCCGGACCTGTTCATGAAGAG 267000 Query 123434 CGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCG-GTGTCCCGGCTTGAGCG 123492 || || | || | ||||| | ||||||||| | || |||||| || || || Sbjct 267001 AGTGGAAAGCAACCAGGACTGGTCCTTGATGTGTCCC-AGCGAGTGTCCTGGGCTGGACG 267059 Query 123493 ACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCA-----A 123547 | | || | |||| || || | ||| | ||| ||| ||||| | | Sbjct 267060 AGTGCTGGGGAGAGGAGTTCGAGAAGCTCTACACCAGATATGAGAAGGAAGGGAGGGTGA 267119 Query 123548 ACAGGTTAGTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGA 123607 | ||| | || | | | ||| | | || | | || ||||| | || ||| Sbjct 267120 AGAGGGTGGTGAAGGCGCAGCA---GCTCTGGT--ACGCCATCATCGAGTCCCAGACCGA 267174 Query 123608 AACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAA 123667 |||||| ||||| |||||||||||||| ||||| ||||||||||| | ||| ||| || Sbjct 267175 AACCGGGACGCCCTACATGCTCTACAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGAA 267234 Query 123668 CTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACA---GCGATGC 123724 | |||| || || ||||| || || || ||| | || | | || |||| || | | Sbjct 267235 CCTGGGCACCATCAAATGCAGCAACCTCTGCACAGAGGTGGTGGAGTACACCAGCAAGGA 267294 Query 123725 CGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCG----AAA 123780 ||| |||||||| || || |||| || || | | || | |||| | | Sbjct 267295 CGAG---GTGGCCGTCTGCAACCTGGCCTCCATCGCCCTCAACATGTACGTCACGCCAGA 267351 Query 123781 ACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGA 123840 ||| |||| | ||| | | ||| | | || || | || || || | | Sbjct 267352 GCGGA-CTTTCGACTTCAAGAAGCTGGCCTCCGTCACCAAGGTAATCGTGAAAAACCTCA 267410 Query 123841 ACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAAC 123900 |||| || ||||| | |||| || || | ||||| ||| || | | Sbjct 267411 ACAAGATCATCGACATCAATTACTACCCGGTCCCCGAAGCCGAGACGTCCAACAAGCGCC 267470 Query 123901 ACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCG-CATG 123959 |||| ||| |||| | ||| | || || ||||||| || || | || |||| ||| Sbjct 267471 ACAGGCCGATCGGGATCGGCGTCCAGGGTCTGGCCGATGCCTTCATCCTGATGCGACAT- 267529 Query 123960 CCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTAC 124019 |||| ||||||| |||||| || |||| || | || || ||| || || || || Sbjct 267530 CCGTTCGAAAGCCCCGAAGCCCAGCTGCTCAACATCCAGATCTTCGAGACCATCTACCAC 267589 Query 124020 GGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCG 124079 | ||| ||||||| ||||||||||| || | | |||| | ||||| | |||| | Sbjct 267590 GCCGCCCTGGAGGCCAGCTGCGAACTCGCCGCAGAGCTCGGCCCCTACGAGACGTACGAG 267649 Query 124080 GGC-AGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAA 124138 ||| |||| | ||| || || | ||||||||||||||| | |||||||| | Sbjct 267650 GGCTCGCCCATC-AGCAAGGGCATCCTCCAGTACGACATGTGGGAGAAGACACCGACCGA 267708 Query 124139 TTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCG--ACGCACGGTTTGCGTAACTCG 124196 |||||||||||| | | || | | | |||| | ||||| || | ||| Sbjct 267709 CCTGTGGGACTGGAAGCTGCTGAAGGA--GAAGATCGCCAAACACGGCGTGAGGAACAGC 267766 Query 124197 CTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCC 124256 ||| || ||||| |||||| ||||| |||| || || || | || |||||||| ||| Sbjct 267767 CTGCTGCTGGCGCCCATGCCCACGGCGTCCACCGCCCAGATCCTGGGCAACAACGAGTCC 267826 Query 124257 TTCGAGCCGTTCACTAACAA 124276 ||||| ||| ||| | ||| Sbjct 267827 ATCGAGGCGTACACCAGCAA 267846 >seq541 Length=321934 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 || || || |||||||||||||||||||| ||||||||||||||||| ||||| ||| Sbjct 160958 GAGACGGGTACGCCGTACATGCTCTACAAGGACGCCTGCAACAGGAAGACCAACCAGCAA 160899 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACA 123717 || |||| || || || | || ||||| ||| | || || ||||||||| Sbjct 160898 AATCTGGGCACCATCAAGTCCAGCAATCTCTGCACAGAGATCGTCGAATACA 160847 >seq619 Length=304156 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 |||||| | || | | ||| || || || || || ||||| ||||| || || || Sbjct 191817 TCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 191758 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | ||| ||| |||| ||||| || || | |||| || |||||||| || || Sbjct 191757 CAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGG 191698 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291 ||||||||||||||| ||||| ||| || | || | || | |||||| | ||| | Sbjct 191697 AATGCCTTCTTTATCCTGAATCTTTGCCTTCA-CGTTCTCAATGGTGTCACTGGGCTCCA 191639 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || || |||| || || || || |||||||| || ||||| |||||| Sbjct 191638 CCTCCAGGGTAATGGTCTTCCCAGTGAGAGTTTTCACGAAAATCTGCATC 191589 >seq1594 Length=294527 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || ||||| ||||||||||| || || | ||| ||| ||| Sbjct 184278 ACAAGATGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCC 184337 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || ||||| || | |||| | |||||||| || || ||||| || ||||| || Sbjct 184338 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 184397 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||||| ||||| || | || | ||||||| | || || || || || | ||||| Sbjct 184398 ATTTTGGCTTTGA-CGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTT 184456 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || || || ||||| || ||||| Sbjct 184457 GCCGGTGAGGGTCTTGACAAAGATCTGCAT 184486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451900906025800