Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13]
18,105 sequences; 801,711,499 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq406 181 1e-40
seq541 95.1 1e-14
seq619 93.3 4e-14
seq1594 87.8 2e-12
>seq406
Length=364117
Score = 181 bits (200), Expect = 1e-40
Identities = 891/1400 (64%), Gaps = 36/1400 (3%)
Strand=Plus/Plus
Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957
|| || ||||| || || || ||||||||| | || | | || | ||||| ||
Sbjct 266462 AAAGTGGCCGAGCGGCCGCAGCACATGCTCATGAGGGTGTCGGTTGGGATCCACGGGCGA 266521
Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017
||||| || || | ||| || ||| | | |||| | || | ||||| |||||
Sbjct 266522 GACATTGACGCTGCCATCGAGACCTACAACCTCCTGTCGGAGAAGTGGTTCACCCACGCC 266581
Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077
||| || | ||| |||||| || || ||| ||| |||| || || ||||
Sbjct 266582 TCTCCGACCCTCTTCAACGCCGGGACCAACCGGCCGCAGCTGTCCAGCTGCTTCCTGCTT 266641
Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137
|| || || ||||||||| || ||||| || || || | |||||| | |||
Sbjct 266642 GCCATGAAGGACGACAGCATCGAAGGCATCTACGACACCCTGAAGCAGTGCGCGCTCATT 266701
Query 123138 TCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAG-GCCGCGGAAGCCG 123196
||||| | | || || || |||||| ||| | | | || | || ||||||
Sbjct 266702 TCCAAGTCCGCTGGGGGGATCGGCGTGGCGGTGAGCTGCATCCGATCGACG-GGAAGCTA 266760
Query 123197 CATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAA 123256
||| ||||| |||| | | || ||| | | | |||||| |||||||||| ||
Sbjct 266761 CATTGCCGGCACCAACGGCAACTCCAACGGATTGGTCCCGATGCTGAGAGTTTACAACAA 266820
Query 123257 CGCCGTGCGGCACGTCGACCAGGGCGGCAAACGCAAA---GGCGCGATGGCGATCTATCT 123313
| | | || ||||||||||||||||||| | | || || | || || || ||
Sbjct 266821 CACGGCTCGCTACGTCGACCAGGGCGGCAACAAGAGACCCGGGGCCTTTGCCATGTACCT 266880
Query 123314 AGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGA 123373
|||||||||||| | || |||| ||| || | | | || |||| || |||
Sbjct 266881 GGAACCGTGGCACTTCGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGA 266940
Query 123374 AGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACG 123433
|| ||| |||| | || | || ||||| || ||| | || || |||| ||| |
Sbjct 266941 GGAGCAGAGAGCCAGAGACCTTTTCTACGCCTTGTGGATCCCGGACCTGTTCATGAAGAG 267000
Query 123434 CGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCG-GTGTCCCGGCTTGAGCG 123492
|| || | || | ||||| | ||||||||| | || |||||| || || ||
Sbjct 267001 AGTGGAAAGCAACCAGGACTGGTCCTTGATGTGTCCC-AGCGAGTGTCCTGGGCTGGACG 267059
Query 123493 ACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCA-----A 123547
| | || | |||| || || | ||| | ||| ||| ||||| | |
Sbjct 267060 AGTGCTGGGGAGAGGAGTTCGAGAAGCTCTACACCAGATATGAGAAGGAAGGGAGGGTGA 267119
Query 123548 ACAGGTTAGTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGA 123607
| ||| | || | | | ||| | | || | | || ||||| | || |||
Sbjct 267120 AGAGGGTGGTGAAGGCGCAGCA---GCTCTGGT--ACGCCATCATCGAGTCCCAGACCGA 267174
Query 123608 AACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAA 123667
|||||| ||||| |||||||||||||| ||||| ||||||||||| | ||| ||| ||
Sbjct 267175 AACCGGGACGCCCTACATGCTCTACAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGAA 267234
Query 123668 CTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACA---GCGATGC 123724
| |||| || || ||||| || || || ||| | || | | || |||| || | |
Sbjct 267235 CCTGGGCACCATCAAATGCAGCAACCTCTGCACAGAGGTGGTGGAGTACACCAGCAAGGA 267294
Query 123725 CGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCG----AAA 123780
||| |||||||| || || |||| || || | | || | |||| | |
Sbjct 267295 CGAG---GTGGCCGTCTGCAACCTGGCCTCCATCGCCCTCAACATGTACGTCACGCCAGA 267351
Query 123781 ACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGA 123840
||| |||| | ||| | | ||| | | || || | || || || | |
Sbjct 267352 GCGGA-CTTTCGACTTCAAGAAGCTGGCCTCCGTCACCAAGGTAATCGTGAAAAACCTCA 267410
Query 123841 ACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAAC 123900
|||| || ||||| | |||| || || | ||||| ||| || | |
Sbjct 267411 ACAAGATCATCGACATCAATTACTACCCGGTCCCCGAAGCCGAGACGTCCAACAAGCGCC 267470
Query 123901 ACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCG-CATG 123959
|||| ||| |||| | ||| | || || ||||||| || || | || |||| |||
Sbjct 267471 ACAGGCCGATCGGGATCGGCGTCCAGGGTCTGGCCGATGCCTTCATCCTGATGCGACAT- 267529
Query 123960 CCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTAC 124019
|||| ||||||| |||||| || |||| || | || || ||| || || || ||
Sbjct 267530 CCGTTCGAAAGCCCCGAAGCCCAGCTGCTCAACATCCAGATCTTCGAGACCATCTACCAC 267589
Query 124020 GGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCG 124079
| ||| ||||||| ||||||||||| || | | |||| | ||||| | |||| |
Sbjct 267590 GCCGCCCTGGAGGCCAGCTGCGAACTCGCCGCAGAGCTCGGCCCCTACGAGACGTACGAG 267649
Query 124080 GGC-AGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAA 124138
||| |||| | ||| || || | ||||||||||||||| | |||||||| |
Sbjct 267650 GGCTCGCCCATC-AGCAAGGGCATCCTCCAGTACGACATGTGGGAGAAGACACCGACCGA 267708
Query 124139 TTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCG--ACGCACGGTTTGCGTAACTCG 124196
|||||||||||| | | || | | | |||| | ||||| || | |||
Sbjct 267709 CCTGTGGGACTGGAAGCTGCTGAAGGA--GAAGATCGCCAAACACGGCGTGAGGAACAGC 267766
Query 124197 CTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCC 124256
||| || ||||| |||||| ||||| |||| || || || | || |||||||| |||
Sbjct 267767 CTGCTGCTGGCGCCCATGCCCACGGCGTCCACCGCCCAGATCCTGGGCAACAACGAGTCC 267826
Query 124257 TTCGAGCCGTTCACTAACAA 124276
||||| ||| ||| | |||
Sbjct 267827 ATCGAGGCGTACACCAGCAA 267846
>seq541
Length=321934
Score = 95.1 bits (104), Expect = 1e-14
Identities = 88/112 (79%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665
|| || || |||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 160958 GAGACGGGTACGCCGTACATGCTCTACAAGGACGCCTGCAACAGGAAGACCAACCAGCAA 160899
Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACA 123717
|| |||| || || || | || ||||| ||| | || || |||||||||
Sbjct 160898 AATCTGGGCACCATCAAGTCCAGCAATCTCTGCACAGAGATCGTCGAATACA 160847
>seq619
Length=304156
Score = 93.3 bits (102), Expect = 4e-14
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172
|||||| | || | | ||| || || || || || ||||| ||||| || || ||
Sbjct 191817 TCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 191758
Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232
| ||| ||| |||| ||||| || || | |||| || |||||||| || ||
Sbjct 191757 CAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGG 191698
Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291
||||||||||||||| ||||| ||| || | || | || | |||||| | ||| |
Sbjct 191697 AATGCCTTCTTTATCCTGAATCTTTGCCTTCA-CGTTCTCAATGGTGTCACTGGGCTCCA 191639
Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
| || || |||| || || || || |||||||| || ||||| ||||||
Sbjct 191638 CCTCCAGGGTAATGGTCTTCCCAGTGAGAGTTTTCACGAAAATCTGCATC 191589
>seq1594
Length=294527
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| ||||| || || ||||| ||||||||||| || || | ||| ||| |||
Sbjct 184278 ACAAGATGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCC 184337
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| || ||||| || | |||| | |||||||| || || ||||| || ||||| ||
Sbjct 184338 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 184397
Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310
||||| ||||| || | || | ||||||| | || || || || || | |||||
Sbjct 184398 ATTTTGGCTTTGA-CGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTT 184456
Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||||| || || || ||||| || |||||
Sbjct 184457 GCCGGTGAGGGTCTTGACAAAGATCTGCAT 184486
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451900906025800
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