Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13]
18,105 sequences; 801,711,499 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq102 131 2e-25
seq1324 107 3e-18
seq644 91.5 2e-13
>seq102
Length=683427
Score = 131 bits (144), Expect = 2e-25
Identities = 173/240 (72%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995
||||| || |||||||| || || || || || ||||||||||| ||||||||| |
Sbjct 618395 GCGGTGTTGACGATGTCAAAGCCGACTGAGCCTCCAAAGGTGCTGGGCTTCCAGTACTCT 618336
Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055
|| ||||| ||| ||| |||| || ||||| | ||| || |||||||||| ||| |
Sbjct 618335 GGCGAGCAAATGGGATTCCCCATCAGGCCTTTGAGGGAGAAAGGAGCCCCCATCTCCACC 618276
Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115
|| |||| || || ||||| || || || || || |||| | ||| | ||||||
Sbjct 618275 ATCGTCTCCCCAAAAATGGCGTTTGGCCGGGGCTTCTCCACGAGCAGGCCGGGGTAGAGC 618216
Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
|| ||||| |||||||| || || || |||||| ||| || || || || || |||
Sbjct 618215 TCCACAGCGTCGACGTCACCGTACAGCTCTTCCAGTATGGCGGCCATTTCTTTGTCTCCT 618156
Score = 87.8 bits (96), Expect = 3e-12
Identities = 110/151 (73%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446
|||||| || || | ||| || |||||||| ||||| ||||| || | | ||
Sbjct 615874 TCACCTACGACTCCCATAGGGGTTGGGCAGTCCGCCGGAACTGGAGGAAGGGCACGAGTG 615815
Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506
|| |||||||| || ||| | ||||||||||| ||||| ||||| || ||||||
Sbjct 615814 TAGTAGGATAGGTTGGAATAGGCTTCCCAGCTTTTGTATCCATAGTCCGCGTTGTAAGTA 615755
Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCTA 10537
|| |||||||||||||| | ||| | ||||
Sbjct 615754 GGAGGACTGTCAATCATATGGGATCGTGCTA 615724
>seq1324
Length=178734
Score = 107 bits (118), Expect = 3e-18
Identities = 143/199 (72%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 8942 TTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAG 9001
||||||||||| || || || | || ||||| |||||||| |||||||| | ||||||
Sbjct 71693 TTCACGATGTCGAAGCCGACCTTGCCTCCGAATGTGCTGGGCTTCCAGTATTCTGGGGAG 71634
Query 9002 CAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTC 9061
|| ||| ||| ||| ||| ||||| | |||||| ||||| |||| || | |||||
Sbjct 71633 CATATGGGGTTACCCAGGAGGCCTTTGAGGGAAAAGGGAGCGCCCATTTCCACCATGCTT 71574
Query 9062 TCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACA 9121
|| ||||| || | || || || | || || | | || || | ||| | ||| | |
Sbjct 71573 TCTCCGAATATCGTCCCTGGTCGAGTCTTCTCCAGCAGTAACCCGGGGTAAAATTCAAGA 71514
Query 9122 GCCTCGACGTCGCCATAGA 9140
|| |||| || |||||||
Sbjct 71513 GCGTCGATATCCCCATAGA 71495
>seq644
Length=298419
Score = 91.5 bits (100), Expect = 2e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 8939 GTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGG 8998
||||| | ||||| || || || || |||||||||||||| ||||||||| | ||
Sbjct 213465 GTTTTGATGATGTTGAAGCCCGTCTCGCCTCCGAAGGTGCTGGGCTTCCAGTACTCTGGA 213524
Query 8999 GAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATG 9058
||| |||| ||| | | || ||||||| ||| || || || |||| ||| | |||
Sbjct 213525 GAGTTGATGGGATTCCCAAGCAGGCCTTTCAGGGAGAAAGGGGCTCCCATCTCAACCATG 213584
Query 9059 CTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCG 9118
||||| ||||| |||| ||| || | ||| || | |||| ||| | || | ||
Sbjct 213585 CTCTCTCCGAATATGGAGTTGGGGCGAGTTTTCTCCATCATGAGGCCTGGATAAAACTCC 213644
Query 9119 ACAGCCTCGACGTCGCCATAGAG 9141
| || || | ||| ||||||||
Sbjct 213645 AGGGCGTCAATGTCACCATAGAG 213667
Score = 87.8 bits (96), Expect = 3e-12
Identities = 164/240 (68%), Gaps = 6/240 (3%)
Strand=Plus/Plus
Query 9722 TAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTT 9781
||||||| || | ||||| || || | |||||||||| |||| ||| ||||| |
Sbjct 220016 TAATGATGAGTCTGGTGGTCTGGAAAAGCTGCTCGTCATCCCAGGTCGGATGTTCACCCT 220075
Query 9782 TGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAAC 9841
| || | || || |||| |||||| || |||||||| |||||||||||||| | | |
Sbjct 220076 TCAGGATGTCACACACCCGGTTGTGCTCCCTCAGCCAGATGGTGGCGTACATGGTGAGGC 220135
Query 9842 CCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCA---CTT 9898
| || || | || |||||||| | || | || | || | ||| | || | |||
Sbjct 220136 CTGGGACAAGTCCGAACACTTCCTGTCCGATGGCGAGCTGCTGCTCAGCAGGGAAACCTT 220195
Query 9899 CGGGCGCATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGT 9958
| || |||| ||| | ||| ||| ||| | |||||| || ||||| || ||||
Sbjct 220196 CAGG---GTACACCATGTCCACTGGGGCCTCAGACATGGTGGGAGGGTACATCTCCCCGT 220252
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723564211307000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |