Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq406 156 5e-33 seq120 100 3e-16 seq541 86.0 8e-12 >seq406 Length=364117 Score = 156 bits (172), Expect = 5e-33 Identities = 884/1389 (64%), Gaps = 40/1389 (3%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| ||||| Sbjct 267852 TAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAC 267793 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || ||||||||||| |||| || |||||||| | | || || ||| Sbjct 267792 GCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCC 267733 Query 116023 TTGAGGGCGTCCCAGTCGTA---GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGG 116079 || || | |||||| | || | | ||||| | |||||||| || ||||| Sbjct 267732 TTCAGCAGCTTCCAGTCCCACAGGTCGGTCGGTGTCTTC---TCCCACATGTCGTACTGG 267676 Query 116080 AGGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCG 116137 ||||| || | | || | ||||| ||||| | ||||| || ||||| | | | Sbjct 267675 AGGATGCCCTTGCTGATG--GGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGG 267618 Query 116138 CCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCA 116197 | | |||| |||| ||||| ||||| ||||| || || ||||| || || | || | Sbjct 267617 CGAGTTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGA 267558 Query 116198 TTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGAC 116257 || ||| ||| | || |||| | || || || || |||| || |||| Sbjct 267557 GCAGCTGGGCTTCGGGGCTTTCGAACGGATGTCGCATCAGGATGAAGGCATCGGCCAGAC 267498 Query 116258 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT-TCGAGCGGTCTCCACG 116316 | ||||| |||| || || || | || | | | || ||| | ||| || || Sbjct 267497 CCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGACGTCTCG-GCTTCGGGGACC 267439 Query 116317 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 116376 || || |||| | ||||| | | | || || ||||| || ||||| |||| Sbjct 267438 GGGTAGTAATTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAG 267379 Query 116377 TGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 116436 ||||| | | | || ||| | || |||| |||| ||| | |||||||| Sbjct 267378 GCCAGCTTCTTGAAGTCGAAAGTCCG---CTCTGGCGTGACGTACATGTTGAGGGCGATG 267322 Query 116437 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACAC 116496 || ||||| || || || | ||| ||||| |||||||| | | || || || Sbjct 267321 GAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCTGTGCAG 267262 Query 116497 AAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 116556 | || | || |||||||||| ||||| || || ||| |||| || || ||| Sbjct 267261 AGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCC 267202 Query 116557 TTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACA 116616 ||||||||||| || |||||||| || || || ||||||| || || || | ||| | Sbjct 267201 TTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAGC 267142 Query 116617 T-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGC 116675 | | ||| || || | || | | ||| |||| ||| || | |||||||| Sbjct 267141 TGCTGCGCCTTCACCACCCTC-TTCACCCTCCCTTCCTTCTCATATCTGGTGTAGAGCTT 267083 Query 116676 CTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAG 116734 ||| ||||| || ||| |||| ||| ||||| || || ||||| | | | Sbjct 267082 CTCGAACTCCTCTCCC-CAGCACTCGTCCAGCCCAGGACACTCGCTGGGACACATCAAGG 267024 Query 116735 ACCATTGACCACCCTCCT--CAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGA 116792 |||| | || | || | || | ||||||||| ||||| |||||||| | || | Sbjct 267023 ACCAGT--CCTGGTTGCTTTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGCGTA 266966 Query 116793 GAAGAGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGT 116851 ||| || || | | | ||| || | | || || || || ||||| |||| Sbjct 266965 GAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGCTCCAGGAAGT 266907 Query 116852 CCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTGCGACGA 116907 | | | || |||||||||||||||||||| || | | ||| || | | Sbjct 266906 CGAACACGTCGAAGTGCCACGGTTCCAGGTACATGGCAAAGGCCCCGGGTCTCTTGTTG- 266848 Query 116908 CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCA 116967 || |||||| || || | ||||| ||| | || | ||||| || | | || Sbjct 266847 CCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCG 266788 Query 116968 TCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGC--TCTGACATCGTGGATGT 117025 | || | ||| || || || ||| || ||| | | || || | | Sbjct 266787 TTGGAGTTGCCGTTGGTGCCGGCAATGT-AG-CTTCCCGTCGATCGGATGCAGCTCACCG 266730 Query 117026 GCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGA 117085 || || || ||||| || |||| || || | ||||||| | | || || |||||| Sbjct 266729 CCACGCCGATCCCCCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGA 266670 Query 117086 TCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTG 117145 | || ||||| ||| |||| | || | ||||||||||| |||| || |||| | Sbjct 266669 TGCCTTCGATGCTGTCGTCCTTCATGGCAAGCAGGAAGCAGCTGGACAGCTGCGGCC--G 266612 Query 117146 GT--GTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCT 117202 || || || |||||||||||||| || | |||||| ||||| || | | |||| Sbjct 266611 GTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAAC-CACTTCTCCGACAGGA 266553 Query 117203 TATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCA 117262 | ||||||||| | | ||| | ||||||| |||||| || || | || |||| || Sbjct 266552 GGTTGTAGGTCTCGATGGCAGCGTCAATGTCTCGCCCGTGGATCCCAACCGACACCCTCA 266493 Query 117263 TAAACATGT 117271 | | ||||| Sbjct 266492 TGAGCATGT 266484 >seq120 Length=551038 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||||| || ||| || || ||||||||||| || | ||||| Sbjct 520407 CCTCGTCCCTGCTAATGAGTTCGTTGGAGTAGGTAAGGCCTGGCATGAGGCCTCTCTTCT 520348 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 ||| |||| | || ||| |||||||| |||||||||||||||||||| ||||| | Sbjct 520347 TCAGCCAGTAGATAGCAGCGAATGAGCCTGAGAAGAAGATCCCCTCCACTGCTGCGAAAG 520288 Query 127659 CAAATAGACGCTC 127671 | | |||||||| Sbjct 520287 CCACAAGACGCTC 520275 >seq541 Length=321934 Score = 86.0 bits (94), Expect = 8e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 115908 GTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGT 115967 |||| | ||||| | ||||| | ||||||||||||||| ||| ||||| ||||| ||||| Sbjct 159240 GTTGCTTGTGTACGCCTCAATGGACTCATTGTTACCCAGGATCTGGGCAGTGGAAGCTGT 159299 Query 115968 GGGCATGGGTGCCATGAGAAGGCTGTT 115994 |||||| || |||| || || ||||| Sbjct 159300 GGGCATCGGGGCCAAAAGCAGACTGTT 159326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613368355651800