Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13]
18,105 sequences; 801,711,499 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq406 156 5e-33
seq120 100 3e-16
seq541 86.0 8e-12
>seq406
Length=364117
Score = 156 bits (172), Expect = 5e-33
Identities = 884/1389 (64%), Gaps = 40/1389 (3%)
Strand=Plus/Minus
Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962
||||||||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| |||||
Sbjct 267852 TAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAC 267793
Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022
|| ||||||||||| |||| || |||||||| | | || || |||
Sbjct 267792 GCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCC 267733
Query 116023 TTGAGGGCGTCCCAGTCGTA---GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGG 116079
|| || | |||||| | || | | ||||| | |||||||| || |||||
Sbjct 267732 TTCAGCAGCTTCCAGTCCCACAGGTCGGTCGGTGTCTTC---TCCCACATGTCGTACTGG 267676
Query 116080 AGGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCG 116137
||||| || | | || | ||||| ||||| | ||||| || ||||| | | |
Sbjct 267675 AGGATGCCCTTGCTGATG--GGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGG 267618
Query 116138 CCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCA 116197
| | |||| |||| ||||| ||||| ||||| || || ||||| || || | || |
Sbjct 267617 CGAGTTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGA 267558
Query 116198 TTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGAC 116257
|| ||| ||| | || |||| | || || || || |||| || ||||
Sbjct 267557 GCAGCTGGGCTTCGGGGCTTTCGAACGGATGTCGCATCAGGATGAAGGCATCGGCCAGAC 267498
Query 116258 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT-TCGAGCGGTCTCCACG 116316
| ||||| |||| || || || | || | | | || ||| | ||| || ||
Sbjct 267497 CCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGACGTCTCG-GCTTCGGGGACC 267439
Query 116317 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 116376
|| || |||| | ||||| | | | || || ||||| || ||||| ||||
Sbjct 267438 GGGTAGTAATTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAG 267379
Query 116377 TGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 116436
||||| | | | || ||| | || |||| |||| ||| | ||||||||
Sbjct 267378 GCCAGCTTCTTGAAGTCGAAAGTCCG---CTCTGGCGTGACGTACATGTTGAGGGCGATG 267322
Query 116437 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACAC 116496
|| ||||| || || || | ||| ||||| |||||||| | | || || ||
Sbjct 267321 GAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCTGTGCAG 267262
Query 116497 AAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 116556
| || | || |||||||||| ||||| || || ||| |||| || || |||
Sbjct 267261 AGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCC 267202
Query 116557 TTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACA 116616
||||||||||| || |||||||| || || || ||||||| || || || | ||| |
Sbjct 267201 TTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAGC 267142
Query 116617 T-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGC 116675
| | ||| || || | || | | ||| |||| ||| || | ||||||||
Sbjct 267141 TGCTGCGCCTTCACCACCCTC-TTCACCCTCCCTTCCTTCTCATATCTGGTGTAGAGCTT 267083
Query 116676 CTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAG 116734
||| ||||| || ||| |||| ||| ||||| || || ||||| | | |
Sbjct 267082 CTCGAACTCCTCTCCC-CAGCACTCGTCCAGCCCAGGACACTCGCTGGGACACATCAAGG 267024
Query 116735 ACCATTGACCACCCTCCT--CAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGA 116792
|||| | || | || | || | ||||||||| ||||| |||||||| | || |
Sbjct 267023 ACCAGT--CCTGGTTGCTTTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGCGTA 266966
Query 116793 GAAGAGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGT 116851
||| || || | | | ||| || | | || || || || ||||| ||||
Sbjct 266965 GAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGCTCCAGGAAGT 266907
Query 116852 CCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTGCGACGA 116907
| | | || |||||||||||||||||||| || | | ||| || | |
Sbjct 266906 CGAACACGTCGAAGTGCCACGGTTCCAGGTACATGGCAAAGGCCCCGGGTCTCTTGTTG- 266848
Query 116908 CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCA 116967
|| |||||| || || | ||||| ||| | || | ||||| || | | ||
Sbjct 266847 CCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCG 266788
Query 116968 TCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGC--TCTGACATCGTGGATGT 117025
| || | ||| || || || ||| || ||| | | || || | |
Sbjct 266787 TTGGAGTTGCCGTTGGTGCCGGCAATGT-AG-CTTCCCGTCGATCGGATGCAGCTCACCG 266730
Query 117026 GCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGA 117085
|| || || ||||| || |||| || || | ||||||| | | || || ||||||
Sbjct 266729 CCACGCCGATCCCCCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGA 266670
Query 117086 TCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTG 117145
| || ||||| ||| |||| | || | ||||||||||| |||| || |||| |
Sbjct 266669 TGCCTTCGATGCTGTCGTCCTTCATGGCAAGCAGGAAGCAGCTGGACAGCTGCGGCC--G 266612
Query 117146 GT--GTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCT 117202
|| || || |||||||||||||| || | |||||| ||||| || | | ||||
Sbjct 266611 GTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAAC-CACTTCTCCGACAGGA 266553
Query 117203 TATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCA 117262
| ||||||||| | | ||| | ||||||| |||||| || || | || |||| ||
Sbjct 266552 GGTTGTAGGTCTCGATGGCAGCGTCAATGTCTCGCCCGTGGATCCCAACCGACACCCTCA 266493
Query 117263 TAAACATGT 117271
| | |||||
Sbjct 266492 TGAGCATGT 266484
>seq120
Length=551038
Score = 100 bits (110), Expect = 3e-16
Identities = 102/133 (77%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598
||||||| | | |||||||| || ||| || || ||||||||||| || | |||||
Sbjct 520407 CCTCGTCCCTGCTAATGAGTTCGTTGGAGTAGGTAAGGCCTGGCATGAGGCCTCTCTTCT 520348
Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658
||| |||| | || ||| |||||||| |||||||||||||||||||| ||||| |
Sbjct 520347 TCAGCCAGTAGATAGCAGCGAATGAGCCTGAGAAGAAGATCCCCTCCACTGCTGCGAAAG 520288
Query 127659 CAAATAGACGCTC 127671
| | ||||||||
Sbjct 520287 CCACAAGACGCTC 520275
>seq541
Length=321934
Score = 86.0 bits (94), Expect = 8e-12
Identities = 71/87 (82%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 115908 GTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGT 115967
|||| | ||||| | ||||| | ||||||||||||||| ||| ||||| ||||| |||||
Sbjct 159240 GTTGCTTGTGTACGCCTCAATGGACTCATTGTTACCCAGGATCTGGGCAGTGGAAGCTGT 159299
Query 115968 GGGCATGGGTGCCATGAGAAGGCTGTT 115994
|||||| || |||| || || |||||
Sbjct 159300 GGGCATCGGGGCCAAAAGCAGACTGTT 159326
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613368355651800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |