Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq406 192 9e-44 seq541 89.7 8e-13 seq1194 84.2 3e-11 >seq406 Length=364117 Score = 192 bits (212), Expect = 9e-44 Identities = 585/891 (66%), Gaps = 26/891 (3%) Strand=Plus/Minus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 |||||| | ||| ||||| | ||| | ||| || | |||| | ||||||||| Sbjct 267280 CTCCACCACCTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCT 267221 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TC 205001 ||| | ||| || | ||||||||| | |||| | ||| | ||| | || |||| || || Sbjct 267220 CTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTC 267161 Query 205002 GCAGAATGTGGGTCCACAATTCGCGAGCCT---CCACTTGCTTCACGTACATCCCTTGAG 205058 | || || | ||| | | | |||| |||| |||||| | |||||| Sbjct 267160 GATGA-TGGCGTACCAGAGCTGCTGCGCCTTCACCACCCTCTTCAC---CCTCCCTTCCT 267105 Query 205059 ACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACC---GTACACGTCCATCAGCCCTG 205115 ||| ||| | ||||| ||| | | || || || | || |||||| |||| | Sbjct 267104 TCTCATATCTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCA---GCCCAG 267048 Query 205116 GACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACA 205175 |||| | |||||||||||| ||||| ||| | | || ||| |||| ||| |||| Sbjct 267047 GACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTTTCCACTCTCTTCATGAACA 266988 Query 205176 GGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGT 205235 |||| |||||||| | |||| || || || | ||| || | || | ||| || Sbjct 266987 GGTCCGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGT 266928 Query 205236 TCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCC 205294 |||| |||| ||||| ||| || | | |||| ||||||||| || | ||| ||| Sbjct 266927 TCTTCTTCAGCTCCAG-GAAGTCGAACACGTCGAAGTGCCACGGTTCCAGGTACATGGCA 266869 Query 205295 ATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACT 205354 | || || || |||||||| || |||||||| || ||||| | | |||| ||||| Sbjct 266868 AAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACT 266809 Query 205355 CGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCA 205414 | ||||||||| |||| ||||||| | | ||||| |||| | ||| ||| | | Sbjct 266808 CTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGCCGGCAATG---TAGCTTCCC 266752 Query 205415 GCCCTCACGTTGGAG---ATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCG 205471 | | | || || | ||| |||| ||||| |||| |||||| || | ||| Sbjct 266751 GTCGATCGGATGCAGCTCACCGCCACGCCGATCCCCCCAGCGGACTTGGAAATGAGCGCG 266692 Query 205472 CACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAG 205531 |||| | ||| ||| |||||||||| ||||| |||||| || | | ||| || Sbjct 266691 CACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCAAGCAGGAAG 266632 Query 205532 CACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTG 205591 || | ||||| | |||||| || |||| |||||| || || ||||||| || Sbjct 266631 CAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTG 266572 Query 205592 AAGCGCTTCTCGCTCAAACACCTGTAGGTCTCCA--GCACGCTCTCCAGATCGAAGCCGT 205649 || | |||||| || |||||||||| | ||| || || | || |||| Sbjct 266571 AACCACTTCTCCGACAGGAGGTTGTAGGTCTCGATGGCA-GC-GTCAATGTCTCGCCCGT 266514 Query 205650 GAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTTCA 205709 | || || | | | |||||||| | ||| || || | ||| ||| || |||| | Sbjct 266513 GGATCCCAACCGACACCCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTCCCGTTGA 266454 Query 205710 CCTTGAGCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAAGTTGAAGG 205760 ||| ||||| |||| | ||| || || || | || |||||| ||| Sbjct 266453 TCTTCAGCAGGTAGGAGCGCTCCAGAGTCTTGAAACCGAAGAAGTTGTAGG 266403 Score = 183 bits (202), Expect = 5e-41 Identities = 354/514 (69%), Gaps = 9/514 (2%) Strand=Plus/Minus Query 204100 CCTGA-TCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCA 204158 ||||| | || ||||||| || ||||| | || || ||||||| ||||| ||| Sbjct 267980 CCTGAATGGATCCGTTGTTTGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCAC 267921 Query 204159 ACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCC 204218 | |||| ||| | ||||| ||||||| |||||| || |||||||||||||||| Sbjct 267920 GCTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCC 267861 Query 204219 CTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAG 204278 |||||| | | |||| ||||| | | |||| | |||||||||||| | ||||| | Sbjct 267860 TGCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGG 267801 Query 204279 CGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGA 204338 ||||| |||||||||||||| ||||| |||||| ||| | ||| |||| ||| || Sbjct 267800 CGGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGA 267741 Query 204339 CCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGA 204398 | | |||||| ||||||| || | | ||| || ||||||||||| Sbjct 267740 TCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTCGGTGTCTTCTCCCACATGTCGT 267681 Query 204399 ACTGAAAGATGCCTTGACTGACTGGGC-TGCCCTTGTACGTCGGATA-AGGCTGATCCTC 204456 |||| | |||||| | |||| ||||| ||||| ||||||| || ||| || ||| Sbjct 267680 ACTGGAGGATGCCCTTGCTGA-TGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGA-GCTC 267623 Query 204457 TTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAAC 204516 | | || || | ||| ||| ||| |||| | ||| |||||||| |||||||| | Sbjct 267622 TGCGGCGAGTTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGAT 267563 Query 204517 GTTTA--ATCTGGCGGCCTCCGTTCCGTCAAACGCCAGACCCAGCATGGCAAACACGTCC 204574 ||| | | ||| ||| || | | || |||| | | || || | || | || Sbjct 267562 GTTGAGCAGCTG--GGCTTCGGGGCTTTCGAACGGATGTCGCATCAGGATGAAGGCATCG 267505 Query 204575 GCCAAGCCCTGCACTCCGATTCCCAACGGTCTGT 204608 |||| ||||| || ||||| || | ||| |||| Sbjct 267504 GCCAGACCCTGGACGCCGATCCCGATCGGCCTGT 267471 Score = 96.9 bits (106), Expect = 6e-15 Identities = 114/152 (75%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| ||||| | ||||||| | |||||| | ||| || || || |||| Sbjct 268248 CCTGCTTCCAGCCGTAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTCGGCTCAGCGATGT 268189 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATA 204028 | |||||||| |||||||| ||||||||| ||||| || || ||||| ||||| | | Sbjct 268188 GGATGTTCAGCGACTGGCTCTGGTCGATG-AAGGCTCCACGGTCTGCCGCCATCCTCAGC 268130 Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 | ||||||||| || || ||||| || || || Sbjct 268129 ACGGTCTTCTGGGAGATTTCCCAAACGGTTTT 268098 >seq541 Length=321934 Score = 89.7 bits (98), Expect = 8e-13 Identities = 110/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973 || ||| ||||| | ||||||| | ||||||| ||| || || || |||||||| Sbjct 158003 CTTCCATCCGTAAAAGTGCATGCTGGTGAGTTTGCCGTAGTTTGGCTCAGCGATGTGAAT 158062 Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGG 204032 ||||||||| || || || |||||| ||| ||| |||||||| ||||| || | | || Sbjct 158063 GTTCAGAGATTGACTCTGATCGATG-TAGGTGCCACGATCTGCTGCCATCTTCAGGACGG 158121 Query 204033 TCTTCTGCGAAATCTCCCACACCGTCTT 204060 | ||||| || || ||||| || || || Sbjct 158122 TTTTCTGGGAGATTTCCCAAACTGTTTT 158149 >seq1194 Length=372752 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 200188 TACAGACTGGTTCCGGAGTACATGGACCCTGCAGGATGACCCTTGTAAAAAATATCACGA 200247 |||||| |||||| | | || ||||| ||||| |||||||| || |||||||| | || Sbjct 147850 TACAGAGTGGTTCAGAACCACCTGGACTCTGCAAGATGACCCCTGCAAAAAATACTATGA 147791 Query 200248 AGTGCTCATTATCAACCCCGTTCTATTAGTCCCTCCAACCAAGG 200291 ||| ||||| | |||||| | || | || ||||||||||||| Sbjct 147790 AGTCCTCATGGTTAACCCCCTCCTGCTGGTGCCTCCAACCAAGG 147747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794975246438800