Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq619 156 1e-32 seq1594 125 2e-23 >seq619 Length=304156 Score = 156 bits (172), Expect = 1e-32 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| || |||||||| |||| ||||||||| | || || | |||||| Sbjct 191801 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCT 191742 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || || || ||||| || | ||||||||| ||| ||| |||||| ||| Sbjct 191741 TCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC 191682 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||||||| ||||||| || | |||||| | | || || |||| || || ||| Sbjct 191681 TGAATCTTTGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTC 191622 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || |||||||||||||| ||||| || Sbjct 191621 TTCCCAGTGAGAGTTTTCACGAAAATCTG 191593 >seq1594 Length=294527 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| || || || || |||| ||||||||||| || || | |||||| Sbjct 188239 AGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 188298 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||||||||| ||||| || | ||||||||| || || || || ||| Sbjct 188299 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 188358 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || || | |||||| | | || || || | ||||| || Sbjct 188359 TGGATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTT 188418 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| ||||||||||| || || Sbjct 188419 TTGCCGGTGAGGGTTTTCACAAAGATCTG 188447 Score = 123 bits (136), Expect = 6e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| ||||| || || || ||||||| |||||||||| || || | |||||| Sbjct 184275 AGGACAAGATGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCT 184334 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||||||||| ||||| || | ||||||||| || || || || ||| Sbjct 184335 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 184394 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || ||| || || ||| || | |||||| | | ||| || |||| ||||| || Sbjct 184395 TGGAT-TTTGGCTTTGACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGT 184453 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || ||||| || || Sbjct 184454 TTTGCCGGTGAGGGTCTTGACAAAGATCTG 184483 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || |||||||| |||| ||||||||||| || || | |||||| Sbjct 184047 AGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 184106 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || ||||| || | ||||||||| || || || || ||| Sbjct 184107 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 184166 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | |||||| | | || || |||| ||||| ||| Sbjct 184167 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTC 184226 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || || Sbjct 184227 TTGCCGGTGAGGGTCTTGACGAAGATCTG 184255 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||||||||| || |||||||| |||| ||||||||||| | || | |||||| Sbjct 188011 AGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 188070 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||||||||| ||||| || | ||||||||| || || || || ||| Sbjct 188071 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 188130 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || ||| ||| || | |||||| | | || || |||| ||||| || Sbjct 188131 TGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTT 188190 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || || Sbjct 188191 TTGCCGGTGAGGGTCTTGACGAAGATCTG 188219 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||||||||| || || || || |||| |||||| || | || ||| | ||||| Sbjct 183819 AGAACAAGGTGGAGGGTAGATTCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCC 183878 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||| ||||| || | ||||||||| || || || || ||| Sbjct 183879 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 183938 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || ||| || || | |||||| | | || || |||| ||||| ||| Sbjct 183939 TGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTC 183998 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || || Sbjct 183999 TTGCCGGTGAGGGTCTTGACGAAGATCTG 184027 Score = 89.7 bits (98), Expect = 1e-12 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || ||||| ||||| |||||| |||| ||||| | ||| || ||||||||||| ||||| Sbjct 183904 CTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGATTACAACATCCAG 183845 Query 200995 AAAGAGTCTACTCTTCACCTTGTT 201018 ||||| ||||| || ||||||||| Sbjct 183844 AAAGAATCTACCCTCCACCTTGTT 183821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178648125188035