Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1594 134 1e-26 seq768 129 6e-25 seq619 123 2e-23 seq120 102 8e-17 >seq1594 Length=294527 Score = 134 bits (148), Expect = 1e-26 Identities = 171/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || || || || ||||| ||||||||||||||| | || || || | Sbjct 184490 AAACATGCAGATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAACC 184431 Query 38300 CACCGACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 || ||||| | || |||| | |||| ||||||| || || ||||| || ||| | | Sbjct 184430 CAGCGACACCATTGAGAACG-TCAAAGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTG 184372 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||| |||| || | || || || |||||||| || | |||||||| |||| Sbjct 184371 ACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACT 184312 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||| |||||||| ||| | || || ||| | || || ||| |||| || ||| Sbjct 184311 ACAATATCCAAAAAGAATCCACCCTCCATCTTGTCCTCCGTCTGAGGGGTGGC 184259 Score = 132 bits (146), Expect = 5e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||||||||||||| | || || ||| ||| Sbjct 188222 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTTGAGCCCAGT 188163 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | ||||||| || || ||||| || ||| | ||||| Sbjct 188162 GACACCATTGAGAACG-TCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCA 188104 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || || |||||||| || | ||||||||| |||||||| Sbjct 188103 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAA 188044 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||||| ||||| | || || || | || || ||| |||| || |||| Sbjct 188043 CATCCAGAAGGAGTCCACCCTCCACCTTGTTCTCCGTCTGAGGGGTGGCC 187994 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| | || || ||| ||| | Sbjct 184258 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 184199 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || ||||| || ||| | ||||| Sbjct 184198 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCA 184140 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | |||||||| |||||||| Sbjct 184139 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 184080 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || || || |||| || ||| | || || ||| Sbjct 184079 CATCCAGAAGGAGTCCACCCTTCACCTGGTCCTCCGTCTCAGGGGTGGC 184031 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || ||||| ||||| ||||||||||||||| | || || ||| || Sbjct 188453 AAGATGCAGATCTTTGTGAAAACCCTCACCGGCAAAACCATCACCCTTGAGGTGGAGCCC 188394 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | |||| | || |||| || || ||||| || ||| | ||| Sbjct 188393 AGTGACACCATTGAGAATGTTAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGAC 188334 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| || | || || || |||||||| || | |||||||| |||||| Sbjct 188333 CAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTAC 188274 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| || ||| | || || || |||| || ||| | || || ||| Sbjct 188273 AACATCCAGAAAGAATCCACACTCCACCTGGTCCTCCGTCTCAGGGGTGGC 188223 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| | || || ||| ||| Sbjct 184030 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 183971 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||||||| || || ||||| || ||| | ||||| Sbjct 183970 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 183911 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | ||||| || ||| |||||| Sbjct 183910 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGATTACAAC 183851 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||||| || ||| | || || || | || || ||| |||| || |||| Sbjct 183850 ATCCAGAAAGAATCTACCCTCCACCTTGTTCTCCGTCTGAGGGGTGGCC 183802 >seq768 Length=308456 Score = 129 bits (142), Expect = 6e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || ||||||||||||||||||||||||||||| ||||||| |||||| |||| Sbjct 127374 ACCAGGTTCTCGTTGACGATGCCGTCGCTGGCGGCGAAGAAGGCCAACACGTGGGAGATG 127315 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 || | |||||||| ||| |||| | |||||||| || ||| ||||||||||||||| Sbjct 127314 AAGTAGCGCTCGTCGTCCTTCAGGGACTCCCAGTGCTGCAGGTCTTTGGACAGGTCCACC 127255 Query 133399 T 133399 | Sbjct 127254 T 127254 Score = 98.7 bits (108), Expect = 1e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 132931 ATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATG 132990 ||||| ||||||||||| |||| ||| ||||| ||||| | || || ||||| || ||| Sbjct 127949 ATGAGCTCGTTGCTGAAGGTCAGGCCAGGCATCAGGCCTCTCTTCTTCAGCCAGAAGATG 127890 Query 132991 GCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCA 133042 |||||||| || || ||||||| ||||| ||||| ||||| ||||||| Sbjct 127889 GCGGCGAACGAACCAGAGAAGAAGATTCCCTCCACGGCAGCGAAGGCCACCA 127838 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/117 (79%), Gaps = 4/117 (3%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAG--GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGA 133224 ||||||||||||||| || | ||||| || ||||| | ||||||||||||||| || Sbjct 127563 GTAGGTGTCGATGAGCAGGCTG--TACATCTCAGAGTGGATGTTCTCCATGGCGATCTGG 127506 Query 133225 AAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 |||||||| || |||| ||||| ||||||||| || || | ||| ||||| ||| Sbjct 127505 AAGCCGTAGAAACACCTGGCCTCTGTCACCTGCACCTCCTGCGTGAAGCGCTCCACC 127449 >seq619 Length=304156 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || ||||| ||||| ||||| || || ||||| ||| | || || ||| | Sbjct 191586 AAAGATGCAGATTTTCGTGAAAACTCTCACTGGGAAGACCATTACCCTGGAGGTGGAGCC 191645 Query 38300 CACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 || |||| | | | |||| | || | ||| || | || ||||| || ||||| | | Sbjct 191646 CAGTGACACCATTGAGAACG-TGAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTG 191704 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||| | || || | || |||||||||||||| || | |||||||| |||| Sbjct 191705 ACCAGCAGAGACTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCGGACT 191764 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||| ||||| | || || || ||||||| || |||| || || Sbjct 191765 ACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGAGGGGAGG 191816 >seq120 Length=551038 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||||||| ||||||||||||| | | || | ||| ||||||||||| | || | Sbjct 520407 CCTCGTCCCTGCTAATGAGTTCGTTGGAGTAGGTAAGGCCTGGCATGAGGCCTCTCTTCT 520348 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| | || || ||||| ||| || ||||||| ||||| || || ||||||| Sbjct 520347 TCAGCCAGTAGATAGCAGCGAATGAGCCTGAGAAGAAGATCCCCTCCACTGCTGCGAAAG 520288 Query 133037 CCACCAGGCGCTCGCC 133052 |||| || ||||| || Sbjct 520287 CCACAAGACGCTCCCC 520272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500059604643200