Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq308 232 5e-55 seq1972 96.9 3e-14 >seq308 Length=648844 Score = 232 bits (256), Expect = 5e-55 Identities = 941/1471 (64%), Gaps = 20/1471 (1%) Strand=Plus/Plus Query 517249 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 517308 ||| || |||| | |||||| || || || ||||| || | |||||| || |||||||| Sbjct 187296 TTTGTCGACGGCGGACACATTTAGGATGCCGTTGGCGTCGATATCAAAGGTAACTTCAAT 187355 Query 517309 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 517368 || || || ||||| ||||||| || | || | | ||| | ||||| ||| Sbjct 187356 CTGTGGCACGCCTCTGGGAGCAGGAGGAAGACCAGAGAGCTCAAACTTCCCCAGGAGATT 187415 Query 517369 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 517428 || || || || | || ||||||||| | | || || ||| | | || || Sbjct 187416 GTTGTCCTTTGTCATGGCTCTCTCACCCTCGTAGACCTGAATCAAGACTCCTGGCTGGTT 187475 Query 517429 ATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGA-ATTGTTGTGTTTCTATCAA 517487 |||||| || || | || | |||| | | | | || || || ||||||| | | Sbjct 187476 ATCTGAGTATGTGGAGAAGA-TCTGAGTCTGCTTCGTGGGGATGGTGGTGTTTCGCTTGA 187534 Query 517488 TAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 517547 ||| | ||||||| ||||| |||||||| | || || || | |||| ||||| | Sbjct 187535 TAAGAGGTGTCATAACGCCACCGGCTGTTTCAATGCCCAGCGACAAGGGAGCCACATCCA 187594 Query 517548 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 517607 || | | || ||| | ||||| || | ||| | || ||||| || || | | Sbjct 187595 GGAGCAGTAAATCTTGGACATTTTCTGAGGTGTCACCCATGAGGATAGCAGCCTGGACGG 187654 Query 517608 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 517667 | |||||||| || || || |||||||| || | | | ||||| | | ||||||||| Sbjct 187655 CTGCACCATAGGCCACCGCCTCATCAGGGTTGATGCTCTTGTTTAGCTCTCTACCATTGA 187714 Query 517668 AAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAA 517727 | || | || || | | | || || || | | || || ||||||| |||| Sbjct 187715 AGAAGTCCTGCAGGAGCTTTTGGATTTTGGGGATTCTTGTAGAGCCGCCAACTAGGACAA 187774 Query 517728 TTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA 517787 ||| || | || ||||||||||| || | ||| || | || ||||| || || | Sbjct 187775 CTTCGTGGATCTTGGATTTATCCAGCTTAGCATCTTGTAGGGCCTTCTCAACTGGCTCCA 187834 Query 517788 GACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT 517847 | | || || | ||| || || || ||||| || || || || ||| | Sbjct 187835 GTGTTCCCCTGAAGAGGTCCGAGTTGAGCTCCTCGAAGCGTGCCCTTGT--GATTGAGGT 187892 Query 517848 -TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTC--GAAGAA 517903 || || ||||| || || || | ||||||| ||||| | | ||||| | || | Sbjct 187893 GTAAAAGTCAATGCCCTCAAAGAGTGAATCAATCTCAATGCTTGCCTGAGTGCTGGAGGA 187952 Query 517904 GATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTT----TGC 517959 | ||| | | || || | || || ||||| | ||||| | | ||| | | | Sbjct 187953 CAAAGTCCTCTTT--GCTCTCTCGCAAGCTGTGCGCAGTCTCCTCACCGCTCTCTTGTTC 188010 Query 517960 TGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAG 518019 || |||| || | || | ||||| || || || || ||| | | || | Sbjct 188011 TGGCTGATG----TCCTTCTTGTGCTTTCTTTTAAACTCCTCCACAAAGTGGCTGACCAT 188066 Query 518020 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 518079 || || |||||||| || || || | | || | || | || ||| | || | || Sbjct 188067 TCGGTTGTCAAAATCCTCCCCACCAAGGTGTGTGTCCCCGGCTGTGGCTTTCACCTCAAA 188126 Query 518080 AAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAAT 518139 | || || |||| | || | | || ||| || || ||||| | |||||| || Sbjct 188127 TATGCCGTCCTCAATGGTCAGGATGGACACGTCAAAAGTGCCTCCACCAAGATCAAAGAT 188186 Query 518140 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 518199 || || || ||| || | ||| ||||| ||||| |||| || || || || Sbjct 188187 GAGGACGTTGCGCTCTCCTCTTTTGCCTTTGTCAAGGCCATAGGCAATGGCTGCCGCTGT 188246 Query 518200 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259 || ||||| || || | | |||||| || || | || ||| ||||| || ||||| Sbjct 188247 CGGCTCATTTATGATGCGGAGAACATTTAGTCCGGAGATCACTCCAGCATCCTTTGTGGC 188306 Query 518260 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT-TCTT 518318 ||| ||||| ||||| ||||| || || || || || || || |||| | || ||| Sbjct 188307 TTGCCTTTGGGAATCATTAAAGTAAGCTGGCACTGTGATGACCGCATTCGACACCCTCTG 188366 Query 518319 TACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTT 518378 | ||| | | || || ||| | |||||||| | | ||| || ||||||| || Sbjct 188367 TCCCAGAA-AGGCCTCGGCTATTTCTCTCATTTTAACCAGGACCATCGAGGAAATTTCTT 188425 Query 518379 CTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAA 518438 | || | || ||| ||| || |||| || | | | || || Sbjct 188426 CAGGACAGAATGTCTTAATTTCTCCTTTATATTCCACCTGGACTTTGGGCTTTCCGTTGT 188485 Query 518439 CATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAAT 518498 | || || || || || |||||| |||||| || || || || |||||| ||| Sbjct 188486 CGTTGATCACCTTGAAGGGCCAGAGTTTCATGTCAGACTGGACCACCAGGTCATCAAACC 188545 Query 518499 CTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGAT 518558 ||| ||||| | ||||| |||||||| || || ||||| || || || ||| |||| | Sbjct 188546 TTCTTCCAATGAGCCGTTTGGCATCAAAGATCGTGTTGGTGGGGTTCATGGCAACTTGGT 188605 Query 518559 ATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTG 518618 ||||| |||||||| || || ||||| || ||||| | || || ||||||| Sbjct 188606 TCTTGGCAGCATCTCCGATGAGCCTCTCTGTGTCAGTAAAGGCCACGTAGCTGGGAGTTG 188665 Query 518619 TGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACAC 518678 | | || ||||||||||| ||||||||||| ||||| |||| || | || || |||| Sbjct 188666 TCCTGTTGCCTTGATCATTGGCAATAATTTCCACTTTTCCATGCTGGAAGACCCCGACAC 188725 Query 518679 AACTAAAAGTTGTTCCTAAATCAATACCAAT 518709 || | || || || | |||||| ||||| Sbjct 188726 AAGAGTAGGTGGTGCCCAGATCAATGCCAAT 188756 >seq1972 Length=117583 Score = 96.9 bits (106), Expect = 3e-14 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||||| || ||||| || || || ||| | |||| |||||||| ||||||||||| Sbjct 23498 CAAAAACTGTGTTGGTAGGGTTCATGGCAACCTGATTCTTGGCTGCGTCTCCAATCAGTC 23439 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 || || ||||| || | ||||| || || || | || ||||| ||||| |||| Sbjct 23438 TCTCGGTATCTGTGAAAGCCACATAGCTGGGTGTGGTCCTGTTGCCTTGGTCATTGGCAA 23379 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | ||||||||||| |||| || | ||||| ||||| | || ||||| | ||| | Sbjct 23378 TGATTTCAACTTTGCCATGCTGGAACACACCAACACAGGAGTAGGTGGTTCCAAGATCGA 23319 Query 518703 TACCAA 518708 | |||| Sbjct 23318 TTCCAA 23313 Score = 89.7 bits (98), Expect = 4e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || || ||||| || | |||||| |||||||||||||| || || | ||||||| Sbjct 24132 TTCTTGTCCAGCCCATAGGCGATAGCAGCTGCAGTTGGTTCATTGATTATACGCAAAACA 24073 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||| || | || ||||| || ||||| || | || || || || || || Sbjct 24072 TTGAGGCCAGAGATGGTGCCAGCATCCTTGGTGGCCTGACGCTGGGAGTCATTGAAGTAA 24013 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 ||||| || || || || |||| Sbjct 24012 GCAGGTACTGTGATCACAGCAT 23991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779923970262130