Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13]
18,105 sequences; 801,711,499 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq308 232 5e-55
seq1972 96.9 3e-14
>seq308
Length=648844
Score = 232 bits (256), Expect = 5e-55
Identities = 941/1471 (64%), Gaps = 20/1471 (1%)
Strand=Plus/Plus
Query 517249 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 517308
||| || |||| | |||||| || || || ||||| || | |||||| || ||||||||
Sbjct 187296 TTTGTCGACGGCGGACACATTTAGGATGCCGTTGGCGTCGATATCAAAGGTAACTTCAAT 187355
Query 517309 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 517368
|| || || ||||| ||||||| || | || | | ||| | ||||| |||
Sbjct 187356 CTGTGGCACGCCTCTGGGAGCAGGAGGAAGACCAGAGAGCTCAAACTTCCCCAGGAGATT 187415
Query 517369 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 517428
|| || || || | || ||||||||| | | || || ||| | | || ||
Sbjct 187416 GTTGTCCTTTGTCATGGCTCTCTCACCCTCGTAGACCTGAATCAAGACTCCTGGCTGGTT 187475
Query 517429 ATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGA-ATTGTTGTGTTTCTATCAA 517487
|||||| || || | || | |||| | | | | || || || ||||||| | |
Sbjct 187476 ATCTGAGTATGTGGAGAAGA-TCTGAGTCTGCTTCGTGGGGATGGTGGTGTTTCGCTTGA 187534
Query 517488 TAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 517547
||| | ||||||| ||||| |||||||| | || || || | |||| ||||| |
Sbjct 187535 TAAGAGGTGTCATAACGCCACCGGCTGTTTCAATGCCCAGCGACAAGGGAGCCACATCCA 187594
Query 517548 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 517607
|| | | || ||| | ||||| || | ||| | || ||||| || || | |
Sbjct 187595 GGAGCAGTAAATCTTGGACATTTTCTGAGGTGTCACCCATGAGGATAGCAGCCTGGACGG 187654
Query 517608 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 517667
| |||||||| || || || |||||||| || | | | ||||| | | |||||||||
Sbjct 187655 CTGCACCATAGGCCACCGCCTCATCAGGGTTGATGCTCTTGTTTAGCTCTCTACCATTGA 187714
Query 517668 AAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAA 517727
| || | || || | | | || || || | | || || ||||||| ||||
Sbjct 187715 AGAAGTCCTGCAGGAGCTTTTGGATTTTGGGGATTCTTGTAGAGCCGCCAACTAGGACAA 187774
Query 517728 TTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA 517787
||| || | || ||||||||||| || | ||| || | || ||||| || || |
Sbjct 187775 CTTCGTGGATCTTGGATTTATCCAGCTTAGCATCTTGTAGGGCCTTCTCAACTGGCTCCA 187834
Query 517788 GACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT 517847
| | || || | ||| || || || ||||| || || || || ||| |
Sbjct 187835 GTGTTCCCCTGAAGAGGTCCGAGTTGAGCTCCTCGAAGCGTGCCCTTGT--GATTGAGGT 187892
Query 517848 -TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTC--GAAGAA 517903
|| || ||||| || || || | ||||||| ||||| | | ||||| | || |
Sbjct 187893 GTAAAAGTCAATGCCCTCAAAGAGTGAATCAATCTCAATGCTTGCCTGAGTGCTGGAGGA 187952
Query 517904 GATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTT----TGC 517959
| ||| | | || || | || || ||||| | ||||| | | ||| | | |
Sbjct 187953 CAAAGTCCTCTTT--GCTCTCTCGCAAGCTGTGCGCAGTCTCCTCACCGCTCTCTTGTTC 188010
Query 517960 TGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAG 518019
|| |||| || | || | ||||| || || || || ||| | | || |
Sbjct 188011 TGGCTGATG----TCCTTCTTGTGCTTTCTTTTAAACTCCTCCACAAAGTGGCTGACCAT 188066
Query 518020 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 518079
|| || |||||||| || || || | | || | || | || ||| | || | ||
Sbjct 188067 TCGGTTGTCAAAATCCTCCCCACCAAGGTGTGTGTCCCCGGCTGTGGCTTTCACCTCAAA 188126
Query 518080 AAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAAT 518139
| || || |||| | || | | || ||| || || ||||| | |||||| ||
Sbjct 188127 TATGCCGTCCTCAATGGTCAGGATGGACACGTCAAAAGTGCCTCCACCAAGATCAAAGAT 188186
Query 518140 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 518199
|| || || ||| || | ||| ||||| ||||| |||| || || || ||
Sbjct 188187 GAGGACGTTGCGCTCTCCTCTTTTGCCTTTGTCAAGGCCATAGGCAATGGCTGCCGCTGT 188246
Query 518200 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259
|| ||||| || || | | |||||| || || | || ||| ||||| || |||||
Sbjct 188247 CGGCTCATTTATGATGCGGAGAACATTTAGTCCGGAGATCACTCCAGCATCCTTTGTGGC 188306
Query 518260 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT-TCTT 518318
||| ||||| ||||| ||||| || || || || || || || |||| | || |||
Sbjct 188307 TTGCCTTTGGGAATCATTAAAGTAAGCTGGCACTGTGATGACCGCATTCGACACCCTCTG 188366
Query 518319 TACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTT 518378
| ||| | | || || ||| | |||||||| | | ||| || ||||||| ||
Sbjct 188367 TCCCAGAA-AGGCCTCGGCTATTTCTCTCATTTTAACCAGGACCATCGAGGAAATTTCTT 188425
Query 518379 CTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAA 518438
| || | || ||| ||| || |||| || | | | || ||
Sbjct 188426 CAGGACAGAATGTCTTAATTTCTCCTTTATATTCCACCTGGACTTTGGGCTTTCCGTTGT 188485
Query 518439 CATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAAT 518498
| || || || || || |||||| |||||| || || || || |||||| |||
Sbjct 188486 CGTTGATCACCTTGAAGGGCCAGAGTTTCATGTCAGACTGGACCACCAGGTCATCAAACC 188545
Query 518499 CTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGAT 518558
||| ||||| | ||||| |||||||| || || ||||| || || || ||| |||| |
Sbjct 188546 TTCTTCCAATGAGCCGTTTGGCATCAAAGATCGTGTTGGTGGGGTTCATGGCAACTTGGT 188605
Query 518559 ATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTG 518618
||||| |||||||| || || ||||| || ||||| | || || |||||||
Sbjct 188606 TCTTGGCAGCATCTCCGATGAGCCTCTCTGTGTCAGTAAAGGCCACGTAGCTGGGAGTTG 188665
Query 518619 TGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACAC 518678
| | || ||||||||||| ||||||||||| ||||| |||| || | || || ||||
Sbjct 188666 TCCTGTTGCCTTGATCATTGGCAATAATTTCCACTTTTCCATGCTGGAAGACCCCGACAC 188725
Query 518679 AACTAAAAGTTGTTCCTAAATCAATACCAAT 518709
|| | || || || | |||||| |||||
Sbjct 188726 AAGAGTAGGTGGTGCCCAGATCAATGCCAAT 188756
>seq1972
Length=117583
Score = 96.9 bits (106), Expect = 3e-14
Identities = 133/186 (72%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582
|||||| || ||||| || || || ||| | |||| |||||||| |||||||||||
Sbjct 23498 CAAAAACTGTGTTGGTAGGGTTCATGGCAACCTGATTCTTGGCTGCGTCTCCAATCAGTC 23439
Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642
|| || ||||| || | ||||| || || || | || ||||| ||||| ||||
Sbjct 23438 TCTCGGTATCTGTGAAAGCCACATAGCTGGGTGTGGTCCTGTTGCCTTGGTCATTGGCAA 23379
Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702
| ||||||||||| |||| || | ||||| ||||| | || ||||| | ||| |
Sbjct 23378 TGATTTCAACTTTGCCATGCTGGAACACACCAACACAGGAGTAGGTGGTTCCAAGATCGA 23319
Query 518703 TACCAA 518708
| ||||
Sbjct 23318 TTCCAA 23313
Score = 89.7 bits (98), Expect = 4e-12
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224
|| || || || ||||| || | |||||| |||||||||||||| || || | |||||||
Sbjct 24132 TTCTTGTCCAGCCCATAGGCGATAGCAGCTGCAGTTGGTTCATTGATTATACGCAAAACA 24073
Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284
|| || |||| || | || ||||| || ||||| || | || || || || || ||
Sbjct 24072 TTGAGGCCAGAGATGGTGCCAGCATCCTTGGTGGCCTGACGCTGGGAGTCATTGAAGTAA 24013
Query 518285 GCAGGAACAGTAATAACGGCAT 518306
||||| || || || || ||||
Sbjct 24012 GCAGGTACTGTGATCACAGCAT 23991
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3779923970262130
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |