Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq768 89.7 6e-13 seq406 89.7 6e-13 seq120 82.4 9e-11 >seq768 Length=308456 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263 || ||||| ||||||||||||||||| ||| ||| || | ||||| |||||| |||| Sbjct 127855 GTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCGCCATCTTCTGGCTGAAGAAGAGAGGC 127914 Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 102312 || ||||| || || |||| ||||||||| ||| ||| ||||||| Sbjct 127915 CTGATGCCTGGCCTGACCTTCAGCAACGAGCTCATCAGTCGAGACGAGG 127963 >seq406 Length=364117 Score = 89.7 bits (98), Expect = 6e-13 Identities = 937/1497 (63%), Gaps = 54/1497 (4%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||| |||| || | || ||||| ||| ||| ||||| ||| Sbjct 266477 CCGCAGCACATGCTCATGAGGGTGTCGGTTGGGATCCACGGGCGAGACATTGACGCTGCC 266536 Query 111672 TTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| ||| || |||| | || ||||| |||||| | || |||||||| Sbjct 266537 ATCGAGACCTACAACCTCCTGTCGGAGAAGTG-GTTCACCCACGCCTCTCCGACCCTCTT 266595 Query 111731 CAACGCTGGTAC--ACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAG 111788 |||||| || || ||| | || || ||||||| || ||||| |||| | ||||| Sbjct 266596 CAACGCCGGGACCAACC--GGCCGCAGCTGTCCAGCTGCTTCCTGCTTGCCATGAAGGAC 266653 Query 111789 GATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCT 111848 || ||| | ||||| |||| ||| || | | || || | || || |||| ||| Sbjct 266654 GACAGCATCGAAGGCATCTACGACACCCTGAAGCAGTGCGCGCTCATTTCCAAGTCCGCT 266713 Query 111849 GGTGGTATCGGGATGCACATCCATGA--TG--TCAGA--GCCAACAAGTCTCGTATTAGA 111902 || || ||||| || | ||| || || || | | ||| || ||| Sbjct 266714 GGGGGGATCGGCGTG----GCGGTGAGCTGCATCCGATCGACGGGAAG-CT-ACATTGCC 266767 Query 111903 GGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 111962 || || || || | || | || | | || ||||| | || | ||| ||| || Sbjct 266768 GGCACCAACGGCAACTCCAACGGATTGGTCCCGATGCTGAGAGTTTACAACAACACGGCT 266827 Query 111963 CGCTATGTAAACCAAGCTGGGCGTC-GCAAG------GGATCTATCGCAGTCTATCTTGA 112015 ||||| || |||| ||||| | |||| || | | || | || || || Sbjct 266828 CGCTACGTCGACCA----GGGCGGCAACAAGAGACCCGGGGCCTTTGCCATGTACCTGGA 266883 Query 112016 GCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGA 112075 || |||||| || | | || ||||| ||| || ||| ||| | ||||| Sbjct 266884 ACCGTGGCACTTCGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAGGA 266943 Query 112076 GGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGT 112135 | | | | | || || |||| ||| | ||||| || || || |||||||||||||| Sbjct 266944 GCAGAGAGCCAGAGACCTTTTCTACGCCTTGTGGATCCCGGACCTGTTCATGAAGAGAGT 267003 Query 112136 TG--AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA- 112192 | || | || | ||||| | | ||||| | || || || || ||| Sbjct 267004 GGAAAGCAACCAGG--ACTGGTCCTTGATGTGTCCCAGCGAGTGTCCTGGGCTGGACGAG 267061 Query 112193 TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGAC 112252 ||| | ||| |||||||| || |||||||| | || ||| | ||| | ||| || Sbjct 267062 TGCTG-GGGAGAGGAGTTCGAGAAGCTCTACACCAGATATGAGAAGGAAGGGAGGGTGAA 267120 Query 112253 TGCGACGGTGCCAGCTGCCG-ATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 112311 | |||| || || | | | ||| | || || || |||| || ||||| || | Sbjct 267121 GAGGGTGGTG-AAGGCGCAGCAGCTCTGGTACGCCATCATCGAGTCCCAGACCGAAACCG 267179 Query 112312 GTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 112371 | || || || ||||| ||||| ||||| || ||| ||||| || || |||| ||| Sbjct 267180 GGACGCCCTACATGCTCTACAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGAACCTGG 267239 Query 112372 GTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGA 112431 | ||||| | ||||||||| ||||| | |||| | || ||| || ||| Sbjct 267240 GCACCATCAAATGCAGCAACCTCTGCACAGAGGTGGTGGAGTACACCAGCAAGGACGAGG 267299 Query 112432 CGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGA 112491 ||| || || ||||| || || ||||| ||| || ||| || |||||| || Sbjct 267300 TGGCCGTCTGCAACCTGGCCTCCATCGCCCTCAACATGTACGTCACGCCAGAG---CGGA 267356 Query 112492 CATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAG 112551 | || || | | || || | || || || || |||||||| |||| Sbjct 267357 CTTTCGACTTCAAGAAGCTGGCCTCCGTCACCAAGGTAATCGTGAAAAACCTCAACAAGA 267416 Query 112552 TTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTC 112611 | || || | |||| ||||| || || | || || | | | ||| | | Sbjct 267417 TCATCGACATCAATTACTACCCGGTCCCCGAAGCCGAGACGTCCAACAAGCGCCACAGGC 267476 Query 112612 CAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTG 112671 | || || |||| ||||| ||||| || |||| ||||| || || || | || | Sbjct 267477 CGATCGGGATCGGCGTCCAGGGTCTGGCCGATGCCTTCATCCTGATGCGACATCCGTTCG 267536 Query 112672 ATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTC 112731 | | |||||| || |||| | || || ||||| || || |||||||| | Sbjct 267537 AAAGCCCCGAAGCCCAGCTGCTCAACATCCAGATCTTCGAGACCATCTACCACGCCGCCC 267596 Query 112732 TTGAGGCGAG-TTCGGAGTTG--GCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTT 112788 | ||||| || | || | | | |||||| | || || || || || | ||||| | Sbjct 267597 TGGAGGCCAGCTGCGAACTCGCCGCAGAGCT---CGGCCCCTACGAGACGTACGAGGGCT 267653 Query 112789 CTCCAGCTTCA-CAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTC 112845 | || | ||| |||||| | || || | || ||||||| || || ||| | | | Sbjct 267654 CGCC--CATCAGCAAGGGCATCCTCCAGTACGACATGTGGG-AGAAGACACCGACCGACC 267710 Query 112846 ACTACGACTGGGACGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTT 112904 | |||| ||| ||| || ||||| ||| | | || | | ||||| || Sbjct 267711 TGTGGGACT-GGAAGCTGCTGAAGGAGAAGATCGCCAAACACGGCGTGAGGAACAGCCTG 267769 Query 112905 TTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTT 112964 || |||| || ||||| || || |||||||| || ||| |||| || || || | | | Sbjct 267770 CTGCTGGCGCCCATGCCCACGGCGTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATC 267829 Query 112965 GAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTC 113024 || | ||||| | |||||||| | || || | |||||||| ||| ||| Sbjct 267830 GAGGCGTACACCAGCAACATCTACACCCGCAGGGTGCTGTCCGGAGAGTTCCAGATCGTC 267889 Query 113025 AACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 113081 ||| || ||| | | ||||| | ||| ||| || ||| | |||| |||||| Sbjct 267890 AACCCTCACCTCCTCAAGGACCTGACGGAGCGTGGCCTGTGGAACGAGGAGATGAAG 267946 >seq120 Length=551038 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263 || ||||| ||||||||||| || || ||| ||||| || ||||| |||||| |||| Sbjct 520299 GTGGAGGGGATCTTCTTCTCAGGCTCATTCGCTGCTATCTACTGGCTGAAGAAGAGAGGC 520358 Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 102298 ||||||||||| || || ||||||||| || || Sbjct 520359 CTCATGCCAGGCCTTACCTACTCCAACGAACTCAT 520393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620601918235600