Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq406 150 2e-31 seq541 91.5 2e-13 seq120 91.5 2e-13 >seq406 Length=364117 Score = 150 bits (166), Expect = 2e-31 Identities = 524/808 (65%), Gaps = 11/808 (1%) Strand=Plus/Minus Query 105841 CTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGAC 105900 |||||| |||| | ||| || ||| || | | || || |||| ||| || |||||| Sbjct 267946 CTTCATCTCCTCGTTCCACAGGCCACGCTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGAC 267887 Query 105901 AATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAA 105960 ||| |||||||| | || || | |||||||| | ||||| | || | Sbjct 267886 GATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCGAT 267827 Query 105961 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 106020 | | || || || |||| ||| || |||||||| || || ||||| || |||| || || Sbjct 267826 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGCAG 267767 Query 106021 ACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGA- 106079 ||||| | | || | || ||| ||||| || | | |||||| | | Sbjct 267766 GCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTC 267707 Query 106080 GCTTGGTTTCACCTTCCCACATATCAAATTGAAGCAC-CCCTTGG-GACGTGGGAGAACC 106137 | | ||| || || ||||||| || | || || | |||||| || |||| || || Sbjct 267706 GGTCGGTGTCTTCT-CCCACATGTCGTACTGGAGGATGCCCTTGCTGA--TGGGCGAGCC 267650 Query 106138 CTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGC 106197 ||| | ||||| |||| || | || | || | ||| ||||| |||||||||| || Sbjct 267649 CTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGTTCGCAGCTGGCCTCCAGGGCGGC 267590 Query 106198 GTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGC 106257 ||| || ||||| || ||||| | || | | || |||||| || || | Sbjct 267589 GTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGGGCTTCGGGGCTTTCGAACGG 267530 Query 106258 GTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTG 106317 | || || || || |||| || ||||| || || || | || || || ||||| Sbjct 267529 ATGTCGCATCAGGATGAAGGCATCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTG 267470 Query 106318 TCGCATATTAGACTTTCGCGCAGTCTCA-ACGGGATAAAAATTTCTGTCAATGACTCGGT 106376 ||| | || ||| | | || || || || || |||| |||| |||| || Sbjct 267469 GCGCTTGTTGGACGT-CTCGGCTTCGGGGACCGGGTAGTAATTGATGTCGATGATCTTGT 267411 Query 106377 TTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAG 106436 | || ||||| | | ||| |||| || || | | || ||||| || Sbjct 267410 TGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCG-- 267353 Query 106437 TCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCAT 106496 |||| |||| ||| | |||||||| || |||| ||||| || ||| ||| | Sbjct 267352 -CTCTGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGT 267294 Query 106497 CCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAAT 106556 |||| |||||||| | | ||||| || | |||| | || || || |||| | Sbjct 267293 CCTTGCTGGTGTACTCCACCACCTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGT 267234 Query 106557 TCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCT 106616 ||| ||||| ||||| ||||||| || |||||||||||||||||||||||||| || | Sbjct 267233 TCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTT 267174 Query 106617 CCGTCTGTGACTTGAGAATTGCCTTCCA 106644 | ||||| |||| || || || | ||| Sbjct 267173 CGGTCTGGGACTCGATGATGGCGTACCA 267146 Score = 104 bits (114), Expect = 3e-17 Identities = 172/244 (70%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 107063 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 107122 || || |||||||| |||| || || |||| |||| | | || || | ||||| || Sbjct 266724 CCGATCCCCCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCCT 266665 Query 107123 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGT--G 107180 | ||| ||| ||||| |||| | |||||||| ||||||| |||||| | ||| | Sbjct 266664 TCGATGCTGTCGTCCTTCATGGCAAGCAGGAAGCAGCTGGACAGCTGCGGCC--GGTTGG 266607 Query 107181 TACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCG 107239 | || || ||||||||||| || | ||||| ||||| || | | |||| || | Sbjct 266606 TCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAAC-CACTTCTCCGACAGGAGGTTG 266548 Query 107240 TATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAAC 107299 || ||||| | | ||| ||||||||| ||||||||| || | | ||| | ||| | | Sbjct 266547 TAGGTCTCGATGGCAGCGTCAATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGC 266488 Query 107300 ATGT 107303 |||| Sbjct 266487 ATGT 266484 >seq541 Length=321934 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| || |||||| || | || ||||| || | ||| ||| || || || Sbjct 160833 CTCATCTCTACTTGTGTATTCGACGATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCC 160892 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || ||| | ||||| |||| ||||||| || ||||||||||||||||| ||||| || Sbjct 160893 CAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACC 160952 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCA 106644 |||||| ||||| |||| || || || | ||| Sbjct 160953 CGTCTCTGTCTGCGACTCGATGATGGCGTACCA 160985 >seq120 Length=551038 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 |||| || | | ||| ||||| || ||| || |||||||||||||| || | ||||| Sbjct 520407 CCTCGTCCCTGCTAATGAGTTCGTTGGAGTAGGTAAGGCCTGGCATGAGGCCTCTCTTCT 520348 Query 117353 TCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACG 117412 ||| ||| || ||||| |||||| || ||||||||||| |||||||| || || | Sbjct 520347 TCAGCCAGTAGATAGCAGCGAATGAGCCTGAGAAGAAGATCCCCTCCACTGCTGCGAAAG 520288 Query 117413 CAAAAAGGCGCTC 117425 | | ||| ||||| Sbjct 520287 CCACAAGACGCTC 520275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589847279970200