Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq406 105 8e-18 seq120 87.8 2e-12 >seq406 Length=364117 Score = 105 bits (116), Expect = 8e-18 Identities = 559/885 (63%), Gaps = 8/885 (1%) Strand=Plus/Minus Query 47955 CATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGC 48014 |||||||| || |||| || || || || | |||| || ||||||||||| ||| Sbjct 267252 CATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGC 267193 Query 48015 ATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCC 48074 || | || || || ||||| |||| || || ||||| | | ||| | | ||| Sbjct 267192 ATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGCGCC 267133 Query 48075 TTTATAACAGCTCT--AGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATT 48132 || | || |||| | | | | || | || ||| | || || | |||||| || | Sbjct 267132 TTCACCACC-CTCTTCACCCTCCCT-TCCTTCTCATATCTGGTGTAGAGCTTCTCGAACT 267075 Query 48133 CATCCCCATA-CACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCC 48191 | || || | ||| | || | ||||||||| || | ||||||||||| ||||| ||| Sbjct 267074 CCTCTCCCCAGCAC-TCGTCCAGCCCAGGACACTCGCTGGGACACATCAAGGACCAGTCC 267016 Query 48192 TCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCA-AAGAGCTATAAATAAATC 48250 | | ||| ||||| |||| || | || || ||||| ||| || ||| | || Sbjct 267015 TGGTTGCTTTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGCGTAGAAA-AGGTC 266957 Query 48251 CCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATC 48310 || | ||| | || || || || | ||| | || || || || ||||| | | || Sbjct 266956 TCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTC 266897 Query 48311 AGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATC 48370 ||||| ||||| | || || || | | || |||| || || || || || || Sbjct 266896 GAAGTGCCACGGTTCCAGGTACATGGCAAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTC 266837 Query 48371 TATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACC 48430 | || | || || ||||| |||||||| | ||| ||||| | || || || | || Sbjct 266836 GACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCGTTGGAGTTGCC 266777 Query 48431 ATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACC 48490 ||||| || | ||| || ||||| | | || || || | | | || || || Sbjct 266776 GTTGGTGCCGGCAATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCCACGCCGATCCC 266717 Query 48491 ACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACT 48550 || || || || || || || ||| | || ||||| || || || ||||| || || Sbjct 266716 CCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCT 266657 Query 48551 ATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATT 48610 || || |||| | || || || || |||| ||||| | || || | || Sbjct 266656 GTCGTCCTTCATGGCAAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTT 266597 Query 48611 AAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAAT 48670 || | || ||||| || || | ||||| ||||| || | | || || || || || Sbjct 266596 GAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGAT 266537 Query 48671 AACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGG 48730 ||| || || || | || || || | || || | ||| | ||| | || || Sbjct 266536 GGCAGCGTCAATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCGG 266477 Query 48731 TCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACC 48790 | || | | ||| || || |||| || || || |||| || || ||||| Sbjct 266476 CCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCCAGAGTCTTGAAACC 266417 Query 48791 AAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTGATGAATT 48835 || ||||||| || || || | || | ||| || || ||||| Sbjct 266416 GAAGAAGTTGTAGGAGAAATCTCTGTCGTAAATGATGGAGGAATT 266372 >seq120 Length=551038 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| ||||| | | | || || ||||| |||||||| |||||||| || ||||||||||| Sbjct 521688 CATCACTCCGAATCTCTGGTACTCGGCTACTCTTTTCTCAAAGAAGTTTGTTTTTCCCTC 521629 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATATTTTTT 18769 || || || | ||||| || ||||| ||||||| ||||| || | |||| Sbjct 521628 TAGAGAAATGGACTCCATGAAGTCAAAAGGATTTTCCACATTGTAAACCTTTT 521576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561981587752200