Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13]
18,105 sequences; 801,711,499 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq308 187 2e-41
seq619 118 9e-21
seq1594 102 7e-16
seq1972 98.7 8e-15
seq1027 96.9 3e-14
seq5413 91.5 1e-12
seq5370 91.5 1e-12
>seq308
Length=648844
Score = 187 bits (206), Expect = 2e-41
Identities = 404/594 (68%), Gaps = 14/594 (2%)
Strand=Plus/Minus
Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054
|| || || ||| | || ||||| || |||||| || || | || |||| |||||
Sbjct 188756 ATTGGCATTGATCTGGGCACCACCTACTCTTGTGTCGGGGTCTTCCAGCATGGAAAAGTG 188697
Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114
||||||||||||||||||||||| ||||| || ||||| || || | || || ||
Sbjct 188696 GAAATTATTGCCAATGATCAAGGCAACAGGACAACTCCCAGCTACGTGGCCTTTACTGAC 188637
Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAA---GCCACTGGTAATCCTACCAAT 550171
|| || | | || ||||| || || | ||| |||| || || || |||||
Sbjct 188636 ACAGAGAGGCTCATCGGAGATGCTGCCAAGAACCAAGTTGCCA-TG--AACCCCACCAAC 188580
Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231
|| || |||||||| ||||| | ||||||||||| ||| |||| | || ||| |
Sbjct 188579 ACGATCTTTGATGCCAAACGGCTCATTGGAAGAAGGTTTGATGACCTGGTGGTCCAGTCT 188520
Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291
|| ||||| | ||||| ||| | | | || | ||||| || | | | || |
Sbjct 188519 GACATGAAACTCTGGCCCTTCAAGGTGATCAACGACAACGGAAAGCC-CAAAGTCCAGGT 188461
Query 550292 --ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349
| | || ||||| |||| ||| | || ||| ||||||| || ||||| |
Sbjct 188460 GGAAT-ATAAAGGAGAAATTAAGACATTCTGTCCTGAAGAAATTTCCTCGATGGTCCTGG 188402
Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409
| ||||||| | ||| |||| || ||| | || || || || |||| || || |
Sbjct 188401 TTAAAATGAGAGAAATAGCCGAGGCCTTTCTGGGACAGAGGGTGTCGAATGCGGTCATCA 188342
Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469
| || ||||| || |||||||| || ||| | ||||| || || ||||||||| ||
Sbjct 188341 CAGTGCCAGCTTACTTTAATGATTCCCAAAGGCAAGCCACAAAGGATGCTGGAGTGATCT 188282
Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529
| ||||| |||||||| || || || ||||| || || || || || |||| ||||| |
Sbjct 188281 CCGGACTAAATGTTCTCCGCATCATAAATGAGCCGACAGCGGCAGCCATTGCCTATGGCC 188222
Query 550530 TTGATAAA--CATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581
|||| ||| || || || ||| | || || |||||||||||| ||| ||
Sbjct 188221 TTGACAAAGGCA-AAAGA-GGAGAGCGCAACGTCCTCATCTTTGATCTTGGTGG 188170
Score = 158 bits (174), Expect = 1e-32
Identities = 442/676 (65%), Gaps = 8/676 (1%)
Strand=Plus/Minus
Query 551913 ACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTA 551972
|| |||||||| ||||| || | || | || || | ||||| | | ||||| |
Sbjct 187982 ACAGCTTGCGAGAGAGCAAAGAGGACTTTGTCCTCCAGCACTCAGGCAAGCATTGAGATT 187923
Query 551973 GATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGAT 552032
|||||| | |||||||| ||||| | | | || | || | ||||| || || ||
Sbjct 187922 GATTCACTCTTTGAGGGCATTGACTTTTACACCTCAATCACAAGGGCACGCTTCGAGGAG 187863
Query 552033 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCA 552092
| || || ||||| || |||| | || ||||| || | | || |||| |
Sbjct 187862 CTCAACTCGGACCTCTTCAGGGGAACACTGGAGCCAGTTGAGAAGGCCCTACAAGATGCT 187803
Query 552093 AAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCT 552152
||| | ||||||||||| | || ||| |||| || ||||| || ||||||||||| ||
Sbjct 187802 AAGCTGGATAAATCCAAGATCCACGAAGTTGTCCTAGTTGGCGGCTCTACAAGAATCCCC 187743
Query 552153 AAAATTCGCGAAATGTTA----AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGT 552208
||||| | ||| | | || ||| || |||||||| | | |||| | || |
Sbjct 187742 AAAATCC---AAAAGCTCCTGCAGGACTTCTT-CAATGGTAGAGAGCTAAACAAGAGCAT 187687
Query 552209 TAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACA 552268
|| || |||||||| || ||||||||||| || | || || ||||| || || |
Sbjct 187686 CAACCCTGATGAGGCGGTGGCCTATGGTGCAGCCGTCCAGGCTGCTATCCTCATGGGTGA 187627
Query 552269 AACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTT 552328
|| ||||| | ||| || | | || | ||||| |||| | || || || |
Sbjct 187626 CACCTCAGAAAATGTCCAAGATTTACTGCTCCTGGATGTGGCTCCCTTGTCGCTGGGCAT 187567
Query 552329 AGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAA 552388
||||||| || || ||||||| ||||||| | |||| || || || || ||
Sbjct 187566 TGAAACAGCCGGTGGCGTTATGACACCTCTTATCAAGCGAAACACCACCATCCCCACGAA 187507
Query 552389 AAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTT 552448
| ||| | || || || || |||||||| || | | || ||||| | |
Sbjct 187506 GCAGACTCAGATCTTCTCCACATACTCAGATAACCAGCCAGGAGTCTTGATTCAGGTCTA 187447
Query 552449 TGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGG 552508
|| || || ||| | || || || || |||| || || | ||| | | ||
Sbjct 187446 CGAGGGTGAGAGAGCCATGACAAAGGACAACAATCTCCTGGGGAAGTTTGAGCTCTCTGG 187387
Query 552509 TATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAA 552568
| ||||||||||||| | || || || || ||||||||||| || |||||||| |||||
Sbjct 187386 TCTTCCTCCTGCTCCCAGAGGCGTGCCACAGATTGAAGTTACCTTTGATATCGACGCCAA 187327
Query 552569 TGGAATTTTGAATGTG 552584
|| || | ||||||
Sbjct 187326 CGGCATCCTAAATGTG 187311
>seq619
Length=304156
Score = 118 bits (130), Expect = 9e-21
Identities = 164/225 (73%), Gaps = 6/225 (3%)
Strand=Plus/Minus
Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310
||| || ||||| || || || ||||| ||| | ||| || ||||| || | ||
Sbjct 191811 CCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGG--ATGTTGTAGTCCGACAGG 191754
Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370
|| | |||||| || ||||| || ||||| || ||||| ||||| |||||||||||
Sbjct 191753 GTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGAATG 191694
Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTC 563429
||||||||||| ||||| ||| || || |||||| || ||| || | | || ||
Sbjct 191693 CCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTGTCACTG-GGCTCCACCTC 191635
Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
|| |||| || || ||||| |||||||| |||||||| |||||
Sbjct 191634 CAGGGTAATGGTCTTCCCAGTGAGAGTTTTCACGAAAATCTGCAT 191590
>seq1594
Length=294527
Score = 102 bits (112), Expect = 7e-16
Identities = 158/223 (71%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312
||| |||||||| |||||||| ||||| |||||| |||||||| |||| || ||
Sbjct 184265 CCTCAGACGGAGGACAAGATGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGT 184324
Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372
| |||||| || || ||||||||||| || || || ||||| ||||| || || ||
Sbjct 184325 GCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 184384
Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGA 563431
|| ||||| || ||||| ||| || |||||| || || || | | || || |
Sbjct 184385 CTCCTTATCCTGGATTTTGGCTTTGACGTTCTCAATGGTGTCGCTG-GGTTCCACCTCCA 184443
Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| || | ||||| || || || || || || || || |||||
Sbjct 184444 GGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 184486
Score = 93.3 bits (102), Expect = 3e-13
Identities = 156/224 (70%), Gaps = 4/224 (2%)
Strand=Plus/Plus
Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310
||| |||||||| ||||| || ||||| ||| | ||| || ||||| |||| ||
Sbjct 188001 CCTCAGACGGAGAACAAGGTGGAGGGTGGACTCCTTCTGG--ATGTTGTAGTCAGAGAGG 188058
Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370
|| | |||||| || || ||||||||||| || || || ||||| ||||| || ||
Sbjct 188059 GTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATG 188118
Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCG 563430
|| || ||||| || ||||| || || |||||| || ||| || | | ||
Sbjct 188119 CCCTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCC 188178
Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
|| || | ||||| || || || || || ||||| || |||||
Sbjct 188179 AGGGTGATGGTTTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 188222
Score = 89.7 bits (98), Expect = 4e-12
Identities = 155/223 (70%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312
|||||||||||| || || || || || |||||| || ||||| |||| || ||
Sbjct 188229 CCTGAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGT 188288
Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372
| |||||| || || ||||||||||| || || || ||||| ||||| || || ||
Sbjct 188289 GCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 188348
Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGA 563431
|| ||||| || || || || || |||||| || ||| || | | || || |
Sbjct 188349 CTCCTTATCCTGGATCTTGGCCTTAACATTCTCAATGGTGTCACTG-GGCTCCACCTCAA 188407
Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| || | ||||| || || || ||||| || || || |||||
Sbjct 188408 GGGTGATGGTTTTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 188450
>seq1972
Length=117583
Score = 98.7 bits (108), Expect = 8e-15
Identities = 105/139 (76%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||| || || || ||||| || || || |||||||| || ||||| || || || ||||
Sbjct 23991 ATGCTGTGATCACAGTACCTGCTTACTTCAATGACTCCCAGCGTCAGGCCACCAAGGATG 24050
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
|||| || |||| || |||||| | ||||| ||||||||||| ||||| |||||
Sbjct 24051 CTGGCACCATCTCTGGCCTCAATGTTTTGCGTATAATCAATGAACCAACTGCAGCTGCTA 24110
Query 550518 TTGCATATGGACTTGATAA 550536
| || ||||| || || ||
Sbjct 24111 TCGCCTATGGGCTGGACAA 24129
Score = 95.1 bits (104), Expect = 1e-13
Identities = 137/188 (73%), Gaps = 8/188 (4%)
Strand=Plus/Plus
Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057
|| || ||| | |||||||| || ||||||||||| | || |||| |||||||||
Sbjct 23315 GGAATCGATCTTGGAACCACCTACTCCTGTGTTGGTGTGTTCCAGCATGGCAAAGTTGAA 23374
Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117
|| ||||||||||| ||||| ||||| || || || ||||| ||||||| || ||
Sbjct 23375 ATCATTGCCAATGACCAAGGCAACAGGACCACACCCAGCTATGTGGCTTTCACAGATACC 23434
Query 550118 GA-ACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTACCAATAC 550173
|| | | | | |||| || ||||| || |||| |||| || || |||||||| ||
Sbjct 23435 GAGAGACTGA-TTGGAGACGCAGCCAAGAATCAGGTTGCCA-TG--AACCCTACCAACAC 23490
Query 550174 TATTTTTG 550181
||||||
Sbjct 23491 AGTTTTTG 23498
Score = 86.0 bits (94), Expect = 5e-11
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 552506 AGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGC 552565
||| |||||||||||||||||||| || || || ||||| || || |||||||| |||||
Sbjct 25211 AGGAATTCCTCCTGCTCCTCGTGGCGTTCCACAGATTGAGGTGACATTCGATATTGATGC 25270
Query 552566 CAATGGAATTTTGAATGTGACTGCT 552590
||||| || ||||||| |||||
Sbjct 25271 TAATGGCATCATGAATGTCTCTGCT 25295
>seq1027
Length=219394
Score = 96.9 bits (106), Expect = 3e-14
Identities = 103/135 (76%), Gaps = 1/135 (1%)
Strand=Plus/Minus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
||||||| || || || || || || || |||||||| || |||||||| || ||||| |
Sbjct 181725 ATGCAGTTATCACAGTTCCTGCTTACTTCAATGACTCCCAGCGTCAAGCCACCAAAGACG 181666
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
| || || | || || ||||| ||||| |||||||||||||| || ||||| ||
Sbjct 181665 CCGGTACCATCTCCGGCCTCAATGTGCTTCGCATTATCAATGAACCCACAGCTGCAGCCA 181606
Query 550518 TTGCATATGGACTTG 550532
||||||| || ||||
Sbjct 181605 TTGCATACGG-CTTG 181592
>seq5413
Length=10859
Score = 91.5 bits (100), Expect = 1e-12
Identities = 98/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||| || | |||||||| || || || |||||||| || || || || || |||||||
Sbjct 7371 ATGCCGTGGTGACTGTACCTGCCTACTTCAATGACTCTCAGCGCCAGGCCACCAAAGATG 7312
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
|||| ||| |||| || |||||||| ||||| || || || || || ||||||||
Sbjct 7311 CTGGGACCATTTCTGGGCTCAATGTTCTGCGTATCATTAACGAGCCAACAGCTGCTGCCA 7252
Query 550518 TTGCATATGG 550527
|||| || ||
Sbjct 7251 TTGCTTACGG 7242
>seq5370
Length=11316
Score = 91.5 bits (100), Expect = 1e-12
Identities = 98/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||| || | |||||||| || || || |||||||| || || || || || |||||||
Sbjct 7800 ATGCCGTGGTGACTGTACCTGCCTACTTCAATGACTCTCAGCGCCAGGCCACCAAAGATG 7741
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
|||| ||| |||| || |||||||| ||||| || || || || || ||||||||
Sbjct 7740 CTGGGACCATTTCTGGGCTCAATGTTCTGCGTATCATTAACGAGCCAACAGCTGCTGCCA 7681
Query 550518 TTGCATATGG 550527
|||| || ||
Sbjct 7680 TTGCTTACGG 7671
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4028338525946450
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