Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq308 187 2e-41 seq619 118 9e-21 seq1594 102 7e-16 seq1972 98.7 8e-15 seq1027 96.9 3e-14 seq5413 91.5 1e-12 seq5370 91.5 1e-12 >seq308 Length=648844 Score = 187 bits (206), Expect = 2e-41 Identities = 404/594 (68%), Gaps = 14/594 (2%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || || || ||| | || ||||| || |||||| || || | || |||| ||||| Sbjct 188756 ATTGGCATTGATCTGGGCACCACCTACTCTTGTGTCGGGGTCTTCCAGCATGGAAAAGTG 188697 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 ||||||||||||||||||||||| ||||| || ||||| || || | || || || Sbjct 188696 GAAATTATTGCCAATGATCAAGGCAACAGGACAACTCCCAGCTACGTGGCCTTTACTGAC 188637 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAA---GCCACTGGTAATCCTACCAAT 550171 || || | | || ||||| || || | ||| |||| || || || ||||| Sbjct 188636 ACAGAGAGGCTCATCGGAGATGCTGCCAAGAACCAAGTTGCCA-TG--AACCCCACCAAC 188580 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || |||||||| ||||| | ||||||||||| ||| |||| | || ||| | Sbjct 188579 ACGATCTTTGATGCCAAACGGCTCATTGGAAGAAGGTTTGATGACCTGGTGGTCCAGTCT 188520 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 || ||||| | ||||| ||| | | | || | ||||| || | | | || | Sbjct 188519 GACATGAAACTCTGGCCCTTCAAGGTGATCAACGACAACGGAAAGCC-CAAAGTCCAGGT 188461 Query 550292 --ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349 | | || ||||| |||| ||| | || ||| ||||||| || ||||| | Sbjct 188460 GGAAT-ATAAAGGAGAAATTAAGACATTCTGTCCTGAAGAAATTTCCTCGATGGTCCTGG 188402 Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409 | ||||||| | ||| |||| || ||| | || || || || |||| || || | Sbjct 188401 TTAAAATGAGAGAAATAGCCGAGGCCTTTCTGGGACAGAGGGTGTCGAATGCGGTCATCA 188342 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 | || ||||| || |||||||| || ||| | ||||| || || ||||||||| || Sbjct 188341 CAGTGCCAGCTTACTTTAATGATTCCCAAAGGCAAGCCACAAAGGATGCTGGAGTGATCT 188282 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 | ||||| |||||||| || || || ||||| || || || || || |||| ||||| | Sbjct 188281 CCGGACTAAATGTTCTCCGCATCATAAATGAGCCGACAGCGGCAGCCATTGCCTATGGCC 188222 Query 550530 TTGATAAA--CATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 |||| ||| || || || ||| | || || |||||||||||| ||| || Sbjct 188221 TTGACAAAGGCA-AAAGA-GGAGAGCGCAACGTCCTCATCTTTGATCTTGGTGG 188170 Score = 158 bits (174), Expect = 1e-32 Identities = 442/676 (65%), Gaps = 8/676 (1%) Strand=Plus/Minus Query 551913 ACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTA 551972 || |||||||| ||||| || | || | || || | ||||| | | ||||| | Sbjct 187982 ACAGCTTGCGAGAGAGCAAAGAGGACTTTGTCCTCCAGCACTCAGGCAAGCATTGAGATT 187923 Query 551973 GATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGAT 552032 |||||| | |||||||| ||||| | | | || | || | ||||| || || || Sbjct 187922 GATTCACTCTTTGAGGGCATTGACTTTTACACCTCAATCACAAGGGCACGCTTCGAGGAG 187863 Query 552033 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCA 552092 | || || ||||| || |||| | || ||||| || | | || |||| | Sbjct 187862 CTCAACTCGGACCTCTTCAGGGGAACACTGGAGCCAGTTGAGAAGGCCCTACAAGATGCT 187803 Query 552093 AAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCT 552152 ||| | ||||||||||| | || ||| |||| || ||||| || ||||||||||| || Sbjct 187802 AAGCTGGATAAATCCAAGATCCACGAAGTTGTCCTAGTTGGCGGCTCTACAAGAATCCCC 187743 Query 552153 AAAATTCGCGAAATGTTA----AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGT 552208 ||||| | ||| | | || ||| || |||||||| | | |||| | || | Sbjct 187742 AAAATCC---AAAAGCTCCTGCAGGACTTCTT-CAATGGTAGAGAGCTAAACAAGAGCAT 187687 Query 552209 TAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACA 552268 || || |||||||| || ||||||||||| || | || || ||||| || || | Sbjct 187686 CAACCCTGATGAGGCGGTGGCCTATGGTGCAGCCGTCCAGGCTGCTATCCTCATGGGTGA 187627 Query 552269 AACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTT 552328 || ||||| | ||| || | | || | ||||| |||| | || || || | Sbjct 187626 CACCTCAGAAAATGTCCAAGATTTACTGCTCCTGGATGTGGCTCCCTTGTCGCTGGGCAT 187567 Query 552329 AGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAA 552388 ||||||| || || ||||||| ||||||| | |||| || || || || || Sbjct 187566 TGAAACAGCCGGTGGCGTTATGACACCTCTTATCAAGCGAAACACCACCATCCCCACGAA 187507 Query 552389 AAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTT 552448 | ||| | || || || || |||||||| || | | || ||||| | | Sbjct 187506 GCAGACTCAGATCTTCTCCACATACTCAGATAACCAGCCAGGAGTCTTGATTCAGGTCTA 187447 Query 552449 TGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGG 552508 || || || ||| | || || || || |||| || || | ||| | | || Sbjct 187446 CGAGGGTGAGAGAGCCATGACAAAGGACAACAATCTCCTGGGGAAGTTTGAGCTCTCTGG 187387 Query 552509 TATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAA 552568 | ||||||||||||| | || || || || ||||||||||| || |||||||| ||||| Sbjct 187386 TCTTCCTCCTGCTCCCAGAGGCGTGCCACAGATTGAAGTTACCTTTGATATCGACGCCAA 187327 Query 552569 TGGAATTTTGAATGTG 552584 || || | |||||| Sbjct 187326 CGGCATCCTAAATGTG 187311 >seq619 Length=304156 Score = 118 bits (130), Expect = 9e-21 Identities = 164/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| || ||||| || || || ||||| ||| | ||| || ||||| || | || Sbjct 191811 CCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGG--ATGTTGTAGTCCGACAGG 191754 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| || ||||| || ||||| || ||||| ||||| ||||||||||| Sbjct 191753 GTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGAATG 191694 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTC 563429 ||||||||||| ||||| ||| || || |||||| || ||| || | | || || Sbjct 191693 CCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTGTCACTG-GGCTCCACCTC 191635 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || |||| || || ||||| |||||||| |||||||| ||||| Sbjct 191634 CAGGGTAATGGTCTTCCCAGTGAGAGTTTTCACGAAAATCTGCAT 191590 >seq1594 Length=294527 Score = 102 bits (112), Expect = 7e-16 Identities = 158/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 ||| |||||||| |||||||| ||||| |||||| |||||||| |||| || || Sbjct 184265 CCTCAGACGGAGGACAAGATGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGT 184324 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | |||||| || || ||||||||||| || || || ||||| ||||| || || || Sbjct 184325 GCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 184384 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGA 563431 || ||||| || ||||| ||| || |||||| || || || | | || || | Sbjct 184385 CTCCTTATCCTGGATTTTGGCTTTGACGTTCTCAATGGTGTCGCTG-GGTTCCACCTCCA 184443 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || | ||||| || || || || || || || || ||||| Sbjct 184444 GGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 184486 Score = 93.3 bits (102), Expect = 3e-13 Identities = 156/224 (70%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| |||||||| ||||| || ||||| ||| | ||| || ||||| |||| || Sbjct 188001 CCTCAGACGGAGAACAAGGTGGAGGGTGGACTCCTTCTGG--ATGTTGTAGTCAGAGAGG 188058 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| || || ||||||||||| || || || ||||| ||||| || || Sbjct 188059 GTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATG 188118 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCG 563430 || || ||||| || ||||| || || |||||| || ||| || | | || Sbjct 188119 CCCTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCC 188178 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | ||||| || || || || || ||||| || ||||| Sbjct 188179 AGGGTGATGGTTTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 188222 Score = 89.7 bits (98), Expect = 4e-12 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 |||||||||||| || || || || || |||||| || ||||| |||| || || Sbjct 188229 CCTGAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGT 188288 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | |||||| || || ||||||||||| || || || ||||| ||||| || || || Sbjct 188289 GCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 188348 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGA 563431 || ||||| || || || || || |||||| || ||| || | | || || | Sbjct 188349 CTCCTTATCCTGGATCTTGGCCTTAACATTCTCAATGGTGTCACTG-GGCTCCACCTCAA 188407 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || | ||||| || || || ||||| || || || ||||| Sbjct 188408 GGGTGATGGTTTTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 188450 >seq1972 Length=117583 Score = 98.7 bits (108), Expect = 8e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || || || ||||| || || || |||||||| || ||||| || || || |||| Sbjct 23991 ATGCTGTGATCACAGTACCTGCTTACTTCAATGACTCCCAGCGTCAGGCCACCAAGGATG 24050 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| || |||| || |||||| | ||||| ||||||||||| ||||| ||||| Sbjct 24051 CTGGCACCATCTCTGGCCTCAATGTTTTGCGTATAATCAATGAACCAACTGCAGCTGCTA 24110 Query 550518 TTGCATATGGACTTGATAA 550536 | || ||||| || || || Sbjct 24111 TCGCCTATGGGCTGGACAA 24129 Score = 95.1 bits (104), Expect = 1e-13 Identities = 137/188 (73%), Gaps = 8/188 (4%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | |||||||| || ||||||||||| | || |||| ||||||||| Sbjct 23315 GGAATCGATCTTGGAACCACCTACTCCTGTGTTGGTGTGTTCCAGCATGGCAAAGTTGAA 23374 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || ||||||||||| ||||| ||||| || || || ||||| ||||||| || || Sbjct 23375 ATCATTGCCAATGACCAAGGCAACAGGACCACACCCAGCTATGTGGCTTTCACAGATACC 23434 Query 550118 GA-ACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTACCAATAC 550173 || | | | | |||| || ||||| || |||| |||| || || |||||||| || Sbjct 23435 GAGAGACTGA-TTGGAGACGCAGCCAAGAATCAGGTTGCCA-TG--AACCCTACCAACAC 23490 Query 550174 TATTTTTG 550181 |||||| Sbjct 23491 AGTTTTTG 23498 Score = 86.0 bits (94), Expect = 5e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 552506 AGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGC 552565 ||| |||||||||||||||||||| || || || ||||| || || |||||||| ||||| Sbjct 25211 AGGAATTCCTCCTGCTCCTCGTGGCGTTCCACAGATTGAGGTGACATTCGATATTGATGC 25270 Query 552566 CAATGGAATTTTGAATGTGACTGCT 552590 ||||| || ||||||| ||||| Sbjct 25271 TAATGGCATCATGAATGTCTCTGCT 25295 >seq1027 Length=219394 Score = 96.9 bits (106), Expect = 3e-14 Identities = 103/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| || || || || || || || |||||||| || |||||||| || ||||| | Sbjct 181725 ATGCAGTTATCACAGTTCCTGCTTACTTCAATGACTCCCAGCGTCAAGCCACCAAAGACG 181666 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || || | || || ||||| ||||| |||||||||||||| || ||||| || Sbjct 181665 CCGGTACCATCTCCGGCCTCAATGTGCTTCGCATTATCAATGAACCCACAGCTGCAGCCA 181606 Query 550518 TTGCATATGGACTTG 550532 ||||||| || |||| Sbjct 181605 TTGCATACGG-CTTG 181592 >seq5413 Length=10859 Score = 91.5 bits (100), Expect = 1e-12 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | |||||||| || || || |||||||| || || || || || ||||||| Sbjct 7371 ATGCCGTGGTGACTGTACCTGCCTACTTCAATGACTCTCAGCGCCAGGCCACCAAAGATG 7312 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| ||| |||| || |||||||| ||||| || || || || || |||||||| Sbjct 7311 CTGGGACCATTTCTGGGCTCAATGTTCTGCGTATCATTAACGAGCCAACAGCTGCTGCCA 7252 Query 550518 TTGCATATGG 550527 |||| || || Sbjct 7251 TTGCTTACGG 7242 >seq5370 Length=11316 Score = 91.5 bits (100), Expect = 1e-12 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | |||||||| || || || |||||||| || || || || || ||||||| Sbjct 7800 ATGCCGTGGTGACTGTACCTGCCTACTTCAATGACTCTCAGCGCCAGGCCACCAAAGATG 7741 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| ||| |||| || |||||||| ||||| || || || || || |||||||| Sbjct 7740 CTGGGACCATTTCTGGGCTCAATGTTCTGCGTATCATTAACGAGCCAACAGCTGCTGCCA 7681 Query 550518 TTGCATATGG 550527 |||| || || Sbjct 7680 TTGCTTACGG 7671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028338525946450