Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq406 360 4e-94 seq768 102 2e-16 seq541 93.3 8e-14 seq120 87.8 3e-12 >seq406 Length=364117 Score = 360 bits (398), Expect = 4e-94 Identities = 866/1295 (67%), Gaps = 38/1295 (3%) Strand=Plus/Minus Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTC-AGGGC 221424 || ||||||| ||||||||| ||| | | |||| | |||| | || || ||||| Sbjct 267651 CCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGTTCGCA-GCTGGCCTCCAGGGC 267593 Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAA 221484 ||||||||||||||||| |||||| ||||||| || ||| ||||| ||| Sbjct 267592 GGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGGGCTTCGGGGCTTTCGAA 267533 Query 221485 GGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCT 221544 || |||| || ||| | |||||||| ||||| || ||||| ||||| ||||| Sbjct 267532 CGGATGTCGCATCAGGATGAAGGCATCGGCCAGACCCTGGACGCCGATCCCGATCGGCCT 267473 Query 221545 GTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATT 221604 ||| | | ||||||| | | ||||| || || || || | |||| |||||| | || Sbjct 267472 GTGGCGCTTGTTGGACGTCTCGGCTTCGGGGACCGGGTAGTAATTGATGTCGATGATCTT 267413 Query 221605 GTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAA 221664 ||||||||| ||| || || || || |||||||| | | ||| | Sbjct 267412 GTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAA-----A 267358 Query 221665 CTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACA 221724 || | | | |||| | ||| ||| ||||| | | ||||||||| || Sbjct 267357 GTCCGCTCTGGCGTGACGT------ACAT----GTTGAGGGCGATGGAGGCCAGGTTGCA 267308 Query 221725 CACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTT 221784 |||||||||||||||||| |||| |||| | | |||||| |||||||||||||| || Sbjct 267307 GACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCTGTGCAGAGGTTGCTGCATTT 267248 Query 221785 GATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAA 221844 |||||| ||||||| | || || ||| | ||| |||||||||||||||||| | Sbjct 267247 GATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTA 267188 Query 221845 GGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCA 221903 ||| || || || ||| | | | | || || |||||| | ||| || ||| Sbjct 267187 GGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTG-CTGCGCCTTCA 267129 Query 221904 CCGTCCTCTTGACTGCACCCTCGGT--CTTTTCATACCCGGTATAGAGCATGTCAAACTT 221961 || |||||| ||||||| | ||| ||||| | ||| |||||| | || |||| Sbjct 267128 CCACCCTCTT-----CACCCTCCCTTCCTTCTCATATCTGGTGTAGAGCTTCTCGAACTC 267074 Query 221962 TTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTT 222021 || || | ||||||||| || |||||| | ||||||||||| ||||| || Sbjct 267073 CTCTCCCCAGCACTCGTCCAGCCCAGGACACTCGCTGGGACACATCAAGGACCAGTCCTG 267014 Query 222022 GTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCT 222081 |||| || || |||| |||||| |||||||||||||||| || | || || ||||| Sbjct 267013 GTTGCTTTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGCGTAGAAAAGGTCTCT 266954 Query 222082 GGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGC 222141 || | |||||||||| || |||| ||| |||| |||| || || || | ||| Sbjct 266953 GGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAA 266894 Query 222142 GTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 ||||||||| ||||| || | ||| | || ||||||| ||||||||| ||||| || || Sbjct 266893 GTGCCACGGTTCCAGGTACATGGCAAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGAC 266834 Query 222202 CATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTT 222261 | || |||| | | | || |||| |||| ||||||||| ||||| Sbjct 266833 GTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTT 266774 Query 222262 GGTGCCCTTAATGTACGCACCGCCGGCCCTC--AGGTTACTGGCAGACATGCCGATACCA 222319 |||||| |||||| || | ||| | || | | || | | || |||||| || Sbjct 266773 GGTGCCGGCAATGTA-GCTTC-CCGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCC 266716 Query 222320 CCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAG 222379 || ||| || || || | ||||| ||| || ||||| |||||| || || | Sbjct 266715 CCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTG 266656 Query 222380 TCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTA 222439 || ||||| | | ||||| || || |||| ||| | | ||| | |||||| Sbjct 266655 TCGTCCTTCATGGCAAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTG 266596 Query 222440 AACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACG 222499 || || || ||| |||||| || || | | |||| || | ||| ||||| | | Sbjct 266595 AAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGATG 266536 Query 222500 ACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGC 222559 | | | |||| |||||| ||| | | |||||| ||||| ||| ||| Sbjct 266535 GCAGCGTCAATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCGGC 266476 Query 222560 CTCT---CCACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAAC 222616 | || |||| ||| | || || |||||||| || |||||||||||||| Sbjct 266475 CGCTCGGCCAC-TTTCCCGTTGATCT--TCAGCAGGTAGGAGCGCTCCAGAGTCTTGAAA 266419 Query 222617 CCAAAGTAGTTG-AGGTCAAAGTCTCTGCCGTGAA 222650 || ||| ||||| ||| ||| |||||| ||| || Sbjct 266418 CCGAAGAAGTTGTAGGAGAAA-TCTCTGTCGTAAA 266385 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124 |||||| || |||| || || | ||| ||| |||||| | ||| ||| || | Sbjct 267943 CATCTCCTCGTTCCACAGGCCACGCTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGACGAT 267884 Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184 ||||| ||||| || |||||||| | ||| | ||| ||| ||| |||||| Sbjct 267883 CTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGA 267824 Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244 ||||||||||||||||||||| || ||| || ||||||||||| |||| |||||| || Sbjct 267823 CTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCT 267764 Query 221245 GTT 221247 ||| Sbjct 267763 GTT 267761 >seq768 Length=308456 Score = 102 bits (112), Expect = 2e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||| ||||| |||||||| ||||| ||| |||||||| || |||||||||| Sbjct 127838 TGGTGGCCTTCGCTGCCGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCGCCATCTTCT 127897 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||| ||| ||| || ||||| || ||| ||| ||||||||||||||| | | Sbjct 127898 GGCTGAAGAAGAGAGGCCTGATGCCTGGCCTGACCTTCAGCAACGAGCTCATCAGTCGAG 127957 Query 26003 ACGAGG 26008 |||||| Sbjct 127958 ACGAGG 127963 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 |||||||||||||| ||||| ||||| || |||| |||||||||||||||||||| ||| Sbjct 128749 AACCCGTTCGACTTCATGGAGAACATTTCTCTGGAGGGGAAGACCAACTTCTTTGAGAAG 128808 Query 26305 AGGGTCGGCGACTATCA 26321 ||||||| || || || Sbjct 128809 CGGGTCGGGGAGTACCA 128825 >seq541 Length=321934 Score = 93.3 bits (102), Expect = 8e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 222037 CTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTC 222096 || ||| |||||||| || ||||||| || || || ||||||| | |||||| || Sbjct 161314 CTTCATAAAGAGGTCTGGAATCCACAAGGCAAAGAACAGGTCTCTGGCTCTCTGCTCTTC 161373 Query 222097 CACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAG 222156 || |||| ||| |||| |||||||||||||| | |||||| |||||||||||||| Sbjct 161374 TTTACCCGTGTTCTTCTTCAGCTCCAAAAACTCAAACACGTCAGCATGCCACGGCTCCAG 161433 Query 222157 ATAGAC 222162 || || Sbjct 161434 GTACAC 161439 >seq120 Length=551038 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| || || || || || || |||||||| ||||| ||| || || || || Sbjct 520272 GGGGAGCGTCTTGTGGCTTTCGCAGCAGTGGAGGGGATCTTCTTCTCAGGCTCATTCGCT 520331 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 || |||| |||||| ||| ||| || |||||| || || || |||||||| ||| Sbjct 520332 GCTATCTACTGGCTGAAGAAGAGAGGCCTCATGCCAGGCCTTACCTACTCCAACGAACTC 520391 Query 25993 ATCAGCAGGGACGAGG 26008 || ||||||||||||| Sbjct 520392 ATTAGCAGGGACGAGG 520407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928634590811200