Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13]
18,105 sequences; 801,711,499 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq308 178 8e-39
seq1027 91.5 1e-12
seq1972 89.7 3e-12
seq619 87.8 1e-11
>seq308
Length=648844
Score = 178 bits (196), Expect = 8e-39
Identities = 374/553 (68%), Gaps = 6/553 (1%)
Strand=Plus/Minus
Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383
|||| | ||||| |||||| | || || || ||| |||||| | || | || |||
Sbjct 188764 GAATATCCATTGGCATTGATCTGGGCACCACCTACTCTTGTGTCGGGGTCTTCCAGCATG 188705
Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443
| ||||| ||||| ||||||||||| ||||| || || ||||| || || || | |
Sbjct 188704 GAAAAGTGGAAATTATTGCCAATGATCAAGGCAACAGGACAACTCCCAGCTACGTGGCCT 188645
Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503
||||||| || || || || ||||||||||| || | |||| ||| || ||
Sbjct 188644 TTACTGACACAGAGAGGCTCATCGGAGATGCTGCCAAGAACCAAGTTGCCATGAACCCCA 188585
Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563
|| || || |||||||| ||| | | ||||| | | |||||||| ||||
Sbjct 188584 CCAACACGATCTTTGATGCCAAACGGCTCATTGGAAGAAGGTTTGATGACCTGGTGGTCC 188525
Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC--ATATAT 474621
| ||||| ||| | ||||| || |||||||| || | || || || | |
Sbjct 188524 AGTCTGACATGAAACTCTGGCCCTTCAAGGTGATCAACGACAACGGAAAGCCCAAAGTCC 188465
Query 474622 AGAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT 474681
|| | |||| | ||| |||| ||| ||| | || ||| ||||||| || |||||
Sbjct 188464 AGGTGGAATATA--AAGGAGAAATTAAGACATTCTGTCCTGAAGAAATTTCCTCGATGGT 188407
Query 474682 TTTAGCCAAAATGAAACAAACCG-CGAGCTCATATCTTGGACAAGAAGTAACTGATGCAG 474740
| | ||||||| | ||| | |||| | | ||| ||||| || | |||| |
Sbjct 188406 CCTGGTTAAAATGAGAGAAATAGCCGAG-GCCTTTCTGGGACAGAGGGTGTCGAATGCGG 188348
Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800
| || || || ||||| || ||||||||||| ||| | ||||| || || ||||| |||
Sbjct 188347 TCATCACAGTGCCAGCTTACTTTAATGATTCCCAAAGGCAAGCCACAAAGGATGCTGGAG 188288
Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860
|| | || || |||||| | || || || ||||| || ||||| || || |||| |
Sbjct 188287 TGATCTCCGGACTAAATGTTCTCCGCATCATAAATGAGCCGACAGCGGCAGCCATTGCCT 188228
Query 474861 ATGGTCTTGATAA 474873
|||| ||||| ||
Sbjct 188227 ATGGCCTTGACAA 188215
>seq1027
Length=219394
Score = 91.5 bits (100), Expect = 1e-12
Identities = 105/137 (77%), Gaps = 6/137 (4%)
Strand=Plus/Minus
Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGG--AACTTTTAATCTTGAA- 476089
||||| |||||| | || |||||||| || | ||||| || ||| ||| |||
Sbjct 179490 GAAGGGGAAAGAGCCATGACCAAAGATAACAATAT-CTTGGGGAAATTTGAAT--TGACT 179434
Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149
||||| || ||||||||||||||||| ||||| || || || || ||||| ||||||||
Sbjct 179433 GGTATCCCGCCTGCTCCCAGAGGAGTCCCTCAGATCGAGGTGACCTTTGACATTGATGCC 179374
Query 476150 AATGGTATTCTTAATGT 476166
||||| ||||| || ||
Sbjct 179373 AATGGCATTCTCAACGT 179357
Score = 89.7 bits (98), Expect = 3e-12
Identities = 111/152 (73%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388
||| | || |||||| | || || ||||| ||||| | | | | || |||| |||
Sbjct 182392 GCAGTAGGCATTGATCTGGGCACCACTTATTCATGTGTGGGTATCTTCCAGCATGGCAAA 182333
Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448
|| || || ||||||||||||||||| || ||||| || ||| ||||| | || |||
Sbjct 182332 GTGGAGATCATTGCCAATGACCAAGGGAACAGAACCACCCCAAGCTATGTGGCCTTCACT 182273
Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAA 474480
|| || || ||||||||||||||||| ||
Sbjct 182272 GACACAGAGAGGCTTATTGGAGATGCTGCCAA 182241
>seq1972
Length=117583
Score = 89.7 bits (98), Expect = 3e-12
Identities = 118/164 (72%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388
||| |||| || ||| | ||||| || ||| ||||| | ||| | || |||| |||
Sbjct 23309 GCAGTTGGAATCGATCTTGGAACCACCTACTCCTGTGTTGGTGTGTTCCAGCATGGCAAA 23368
Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448
|| ||||| ||||||||||||||||| || || || ||||| ||||| |||| ||
Sbjct 23369 GTTGAAATCATTGCCAATGACCAAGGCAACAGGACCACACCCAGCTATGTGGCTTTCACA 23428
Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGC 474492
|| || || || |||||||| || || || |||| | |||
Sbjct 23429 GATACCGAGAGACTGATTGGAGACGCAGCCAAGAATCAGGTTGC 23472
Score = 89.7 bits (98), Expect = 3e-12
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794
|||| || || || || || || || || ||||| || || ||||| || || || ||||
Sbjct 23991 ATGCTGTGATCACAGTACCTGCTTACTTCAATGACTCCCAGCGTCAGGCCACCAAGGATG 24050
Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854
| || | || | || || |||||||| ||||| || ||||||||||| ||||| ||
Sbjct 24051 CTGGCACCATCTCTGGCCTCAATGTTTTGCGTATAATCAATGAACCAACTGCAGCTGCTA 24110
Query 474855 TTGCTTATGGTCTTGATAAGAA 474876
| || ||||| || || |||||
Sbjct 24111 TCGCCTATGGGCTGGACAAGAA 24132
>seq619
Length=304156
Score = 87.8 bits (96), Expect = 1e-11
Identities = 120/168 (71%), Gaps = 6/168 (4%)
Strand=Plus/Minus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
|||||| || || || |||||||| || || | || || ||||||||||| ||||| ||
Sbjct 191745 ATCTTCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGAATGCCTTCTTT 191686
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736
|| ||||||||| || || ||||| || ||| || | || ||||||||
Sbjct 191685 ATCCTGAATCTTTGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAAT 191626
Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTGGAACGACATCTTTAA 480784
|| || || |||||||| || |||||||| || |||||||||
Sbjct 191625 GGTCTTCCCAGTGAGAGTTTTCACGAAAATCTG------CATCTTTAA 191584
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3267402588704540
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |