Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq308 178 8e-39 seq1027 91.5 1e-12 seq1972 89.7 3e-12 seq619 87.8 1e-11 >seq308 Length=648844 Score = 178 bits (196), Expect = 8e-39 Identities = 374/553 (68%), Gaps = 6/553 (1%) Strand=Plus/Minus Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383 |||| | ||||| |||||| | || || || ||| |||||| | || | || ||| Sbjct 188764 GAATATCCATTGGCATTGATCTGGGCACCACCTACTCTTGTGTCGGGGTCTTCCAGCATG 188705 Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443 | ||||| ||||| ||||||||||| ||||| || || ||||| || || || | | Sbjct 188704 GAAAAGTGGAAATTATTGCCAATGATCAAGGCAACAGGACAACTCCCAGCTACGTGGCCT 188645 Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503 ||||||| || || || || ||||||||||| || | |||| ||| || || Sbjct 188644 TTACTGACACAGAGAGGCTCATCGGAGATGCTGCCAAGAACCAAGTTGCCATGAACCCCA 188585 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563 || || || |||||||| ||| | | ||||| | | |||||||| |||| Sbjct 188584 CCAACACGATCTTTGATGCCAAACGGCTCATTGGAAGAAGGTTTGATGACCTGGTGGTCC 188525 Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC--ATATAT 474621 | ||||| ||| | ||||| || |||||||| || | || || || | | Sbjct 188524 AGTCTGACATGAAACTCTGGCCCTTCAAGGTGATCAACGACAACGGAAAGCCCAAAGTCC 188465 Query 474622 AGAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT 474681 || | |||| | ||| |||| ||| ||| | || ||| ||||||| || ||||| Sbjct 188464 AGGTGGAATATA--AAGGAGAAATTAAGACATTCTGTCCTGAAGAAATTTCCTCGATGGT 188407 Query 474682 TTTAGCCAAAATGAAACAAACCG-CGAGCTCATATCTTGGACAAGAAGTAACTGATGCAG 474740 | | ||||||| | ||| | |||| | | ||| ||||| || | |||| | Sbjct 188406 CCTGGTTAAAATGAGAGAAATAGCCGAG-GCCTTTCTGGGACAGAGGGTGTCGAATGCGG 188348 Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800 | || || || ||||| || ||||||||||| ||| | ||||| || || ||||| ||| Sbjct 188347 TCATCACAGTGCCAGCTTACTTTAATGATTCCCAAAGGCAAGCCACAAAGGATGCTGGAG 188288 Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 || | || || |||||| | || || || ||||| || ||||| || || |||| | Sbjct 188287 TGATCTCCGGACTAAATGTTCTCCGCATCATAAATGAGCCGACAGCGGCAGCCATTGCCT 188228 Query 474861 ATGGTCTTGATAA 474873 |||| ||||| || Sbjct 188227 ATGGCCTTGACAA 188215 >seq1027 Length=219394 Score = 91.5 bits (100), Expect = 1e-12 Identities = 105/137 (77%), Gaps = 6/137 (4%) Strand=Plus/Minus Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGG--AACTTTTAATCTTGAA- 476089 ||||| |||||| | || |||||||| || | ||||| || ||| ||| ||| Sbjct 179490 GAAGGGGAAAGAGCCATGACCAAAGATAACAATAT-CTTGGGGAAATTTGAAT--TGACT 179434 Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 ||||| || ||||||||||||||||| ||||| || || || || ||||| |||||||| Sbjct 179433 GGTATCCCGCCTGCTCCCAGAGGAGTCCCTCAGATCGAGGTGACCTTTGACATTGATGCC 179374 Query 476150 AATGGTATTCTTAATGT 476166 ||||| ||||| || || Sbjct 179373 AATGGCATTCTCAACGT 179357 Score = 89.7 bits (98), Expect = 3e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| | || |||||| | || || ||||| ||||| | | | | || |||| ||| Sbjct 182392 GCAGTAGGCATTGATCTGGGCACCACTTATTCATGTGTGGGTATCTTCCAGCATGGCAAA 182333 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || ||||||||||||||||| || ||||| || ||| ||||| | || ||| Sbjct 182332 GTGGAGATCATTGCCAATGACCAAGGGAACAGAACCACCCCAAGCTATGTGGCCTTCACT 182273 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAA 474480 || || || ||||||||||||||||| || Sbjct 182272 GACACAGAGAGGCTTATTGGAGATGCTGCCAA 182241 >seq1972 Length=117583 Score = 89.7 bits (98), Expect = 3e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| |||| || ||| | ||||| || ||| ||||| | ||| | || |||| ||| Sbjct 23309 GCAGTTGGAATCGATCTTGGAACCACCTACTCCTGTGTTGGTGTGTTCCAGCATGGCAAA 23368 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| ||||||||||||||||| || || || ||||| ||||| |||| || Sbjct 23369 GTTGAAATCATTGCCAATGACCAAGGCAACAGGACCACACCCAGCTATGTGGCTTTCACA 23428 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGC 474492 || || || || |||||||| || || || |||| | ||| Sbjct 23429 GATACCGAGAGACTGATTGGAGACGCAGCCAAGAATCAGGTTGC 23472 Score = 89.7 bits (98), Expect = 3e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || || || || || || || || ||||| || || ||||| || || || |||| Sbjct 23991 ATGCTGTGATCACAGTACCTGCTTACTTCAATGACTCCCAGCGTCAGGCCACCAAGGATG 24050 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || | || | || || |||||||| ||||| || ||||||||||| ||||| || Sbjct 24051 CTGGCACCATCTCTGGCCTCAATGTTTTGCGTATAATCAATGAACCAACTGCAGCTGCTA 24110 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 | || ||||| || || ||||| Sbjct 24111 TCGCCTATGGGCTGGACAAGAA 24132 >seq619 Length=304156 Score = 87.8 bits (96), Expect = 1e-11 Identities = 120/168 (71%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || || || |||||||| || || | || || ||||||||||| ||||| || Sbjct 191745 ATCTTCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGAATGCCTTCTTT 191686 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 || ||||||||| || || ||||| || ||| || | || |||||||| Sbjct 191685 ATCCTGAATCTTTGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAAT 191626 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTGGAACGACATCTTTAA 480784 || || || |||||||| || |||||||| || ||||||||| Sbjct 191625 GGTCTTCCCAGTGAGAGTTTTCACGAAAATCTG------CATCTTTAA 191584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267402588704540