Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq378 140 4e-28 >seq378 Length=373364 Score = 140 bits (154), Expect = 4e-28 Identities = 569/880 (65%), Gaps = 35/880 (4%) Strand=Plus/Plus Query 160085 GTCAACGTCTTC---GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCA 160141 |||| || |||| ||| || |||||||| || || || || | ||| |||| ||| Sbjct 251273 GTCATCGACTTCTGGGTCAAACTTATTTGCAAAGAGGTGCTG--CTGTCTC-AGGAGCCA 251329 Query 160142 GTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGG 160201 | | ||| |||| ||| |||| || |||| | ||| || | || || Sbjct 251330 CAGGAGGTCGCCGGCGCCGTACACACACACGGCTCTCCTGTAGGTCCCCATACATGGATA 251389 Query 160202 GTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTAT 160261 |||| |||||||||| |||||| ||| | || |||||| ||| | ||| | Sbjct 251390 GTACGGAGCTCCTTTTTTCACGTCTCCTGTTAAATAAGACCACTTGACAGCTCGGGCGAG 251449 Query 160262 CGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGG 160321 ||| |||||| || ||||| |||||| | |||| | || ||||| || Sbjct 251450 AGCCATCATGTCCGATGTGTCATATTTGCCGTTTGGGGGCGTTGATCCAGGAACCGAGGA 251509 Query 160322 CATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTC 160381 ||| | ||| ||||||||||||| ||||||||| || ||||| ||||| || |||||| Sbjct 251510 CATCCTCTGCAGGGTGGCCCACATGTGTTCGTCTGGACTGTATGTGTCTTTTTCCCATTC 251569 Query 160382 CATGAACTCTCCGATTAACCTGTCCC----GCAGAACGTGAGTAACGTAGGATCTGGTCA 160437 |||||| | || || |||| ||| ||| |||| | || ||| || | | Sbjct 251570 CATGAATT-TCTGA---ACCTCTCCGTTCTGCATCACGTATTTCACAAAGGCCCTAGAGA 251625 Query 160438 CGACAAAGTACGCGCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTG-TCTTTGTCC 160496 | |||||||| ||| | || ||||| || || | || ||||| | | | ||| || Sbjct 251626 CCACAAAGTAGGCGTTTCCTGAGAACATTGGGCTACTGATGGGCGGTGGGCTTTTTCTCA 251685 Query 160497 TGACCGGTGTTAGACACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCAT- 160555 | ||| | | | || || || | | ||| | | || ||| | |||| | Sbjct 251686 CGTCCGTTCTGATG----ACGCCGTTGGCGACATTGTGGTGGTACTGCCAGC-GACCTTT 251740 Query 160556 CTTGTG--CGGTGGCATGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGC 160613 |||| | ||| || ||| || || | ||||| || | ||| |||||| Sbjct 251741 CTTGGAGACACTGG--TGACTTCAGTTTCCATGCTGTTCCTCCCATTGAGGACTTTCAGA 251798 Query 160614 TGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACG 160673 | | || ||||| || || |||| |||||||| || || || || | | | Sbjct 251799 GCCATCACCATCTCCCTATTGGTTTTGATGGGAAAGTCTGTCCCACAGGTATTCAAAAGG 251858 Query 160674 TACTTCCATTTCGCGCT-CAG-GTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCA 160731 || ||||| || || ||| || |||| || ||||||| || | ||||||||||| Sbjct 251859 TATTTCCAC--CGAACTTCAGAGTGCAGCAGATCTTTCATGCAGTTCAGATCTGCCTGCA 251916 Query 160732 CGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGA 160791 | | | ||| ||||| ||||| || | |||| ||||||||| ||||| || || | Sbjct 251917 CTCTGGACCATGAAGCATACACAACACTTTCTAATTTACTGGCTACAAAAACATTGGGAA 251976 Query 160792 AACACGACACGATTCCCACCACCGCC---AGAAAGAACATCTTATCCGCCTTTCGGTCCA 160848 | || || || ||| || ||| ||| |||| ||| | | ||| |||| | Sbjct 251977 AGCAGGAAACTATTTCCTTCACAGCCCTGTGAAAAGACAGGGAA---GACTTCTGGTCAA 252033 Query 160849 CGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCT 160908 || ||||| || | |||||| || || || || | | || | | || ||||||| Sbjct 252034 TATGGACGCAGTAGATGTTCTGCGGAGCATAAATAGATCGTAGGAGTCGTTCAAACATCT 252093 Query 160909 CTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAA 160948 ||||||| | |||||||| || ||||| || || ||||| Sbjct 252094 CTATCTTCTCGTGGATCACCATGGAGTATGCAATGGGAAA 252133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577088568079800