Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13]
18,105 sequences; 801,711,499 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq406 163 3e-35
seq120 91.5 2e-13
seq541 82.4 9e-11
>seq406
Length=364117
Score = 163 bits (180), Expect = 3e-35
Identities = 950/1495 (64%), Gaps = 50/1495 (3%)
Strand=Plus/Plus
Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271
|| ||| ||||| ||||| |||| | | || ||||||||| ||||||||| ||| |
Sbjct 266477 CCGCAGCACATGCTCATGAGGGTGTCGGTTGGGATCCACGGGCGAGACATTGACGCTGCC 266536
Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330
| ||||| ||| || |||| | | || ||||| ||||| | || ||||||||
Sbjct 266537 ATCGAGACCTACAACCTCCTGTCGGAGAAGTG-GTTCACCCACGCCTCTCCGACCCTCTT 266595
Query 75331 CAATGCTGGTAC--ACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388
||| || || || ||| | |||||| ||||||| |||||||| | |||| |||||
Sbjct 266596 CAACGCCGGGACCAACC--GGCCGCAGCTGTCCAGCTGCTTCCTGCTTGCCATGAAGGAC 266653
Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 75448
||| ||| | || ||||| | || || | | |||| |||| || || |||| |||
Sbjct 266654 GACAGCATCGAAGGCATCTACGACACCCTGAAGCAGTGCGCGCTCATTTCCAAGTCCGCT 266713
Query 75449 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAAT------AAATCTCGTATTCGG 75502
||||| || || || | ||| || | || || || || |||
Sbjct 266714 GGGGGGATCGGCGTG----GCGGTGAGCTG-CATCCGATCGACGGGAAGCT-ACATTGCC 266767
Query 75503 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 75562
|| || || || | || | || | | || ||||| | || | ||| ||| ||
Sbjct 266768 GGCACCAACGGCAACTCCAACGGATTGGTCCCGATGCTGAGAGTTTACAACAACACGGCT 266827
Query 75563 CGCTATGTAAATCAAGCGGGGCGTC-GCAAG------GGGTCCATCGCGGTCTACTTGGA 75615
||||| | || | | ||||| | |||| ||| || | || | ||| ||||
Sbjct 266828 CGCTACG----TCGACCAGGGCGGCAACAAGAGACCCGGGGCCTTTGCCATGTACCTGGA 266883
Query 75616 ACCATGGCATGCCGATATCATGGAGTTCCTTGAG-TTACGACTCAACCAAGGTGACGAAG 75674
||| ||||| ||| | | || ||||| ||| | | || ||| ||| | || |
Sbjct 266884 ACCGTGGCACTTCGACGTGTTCGACTTCCTGGAGCTGAAGA-AGAACACAGGAAAGGAGG 266942
Query 75675 AGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGG 75734
|| | ||||| || || | || ||||||| || ||||| ||||||||| | |
Sbjct 266943 AGCAGAGAGCCAGAGACCTTTTCTACGCCTTGTGGATCCCGGACCTGTTCATGAAGAGAG 267002
Query 75735 TTG--AGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGA 75792
| | || | || | ||||| | | ||||| | || || || || |||
Sbjct 267003 TGGAAAGCAACCAGG--ACTGGTCCTTGATGTGTCCCAGCGAGTGTCCTGGGCTGGACGA 267060
Query 75793 -CGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCA 75851
|| | ||| |||||||| || |||||||| | ||||| |||| || || | |
Sbjct 267061 GTGCTG-GGGAGAGGAGTTCGAGAAGCTCTACACCAGATATGAGAAGGAAGGGAGGGTGA 267119
Query 75852 ATGCGACTGTACCAGCCGCCG-ATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACT 75910
| | | || || ||| | | | ||| | || || || | || ||||| || ||
Sbjct 267120 A-GAGGGTGGTGAAGGCGCAGCAGCTCTGGTACGCCATCATCGAGTCCCAGACCGAAACC 267178
Query 75911 GGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTG 75970
|| || || || ||||| |||||||| ||||| |||| |||||| ||||| |||| ||
Sbjct 267179 GGGACGCCCTACATGCTCTACAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGAACCTG 267238
Query 75971 GGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030
|| || ||||| || || || ||||| || | | |||||||| ||||| |||
Sbjct 267239 GGCACCATCAAATGCAGCAACCTCTGCACAGAGGTGGTGGAGTACACCAGCAAGGACGAG 267298
Query 76031 ACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGC 76090
||| || ||||| |||| || |||||||| | ||| |||| |||| ||
Sbjct 267299 GTGGCCGTCTGCAACCTGGCCTCCATCGCCCTCAACATGTACGTCACGCCAGAG---CGG 267355
Query 76091 ACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGA 76150
||||| || | | || || |||| ||| | | ||||| || |||
Sbjct 267356 ACTTTCGACTTCAAGAAGCTGGCCTCCGTCACCAAGGTAATCGTGAAAAACCTCAACAAG 267415
Query 76151 GTCATTGACAGAAATTTTTATCCCGT-TGAGACTGCGCGAAAGTCTAATATGCGACACAG 76209
|||| |||| |||| || || || || || | | ||| || | ||| |||||
Sbjct 267416 ATCATCGACATCAATTACTACCCGGTCCCCGAAGCCGAG-ACGTCCAACAAGCGCCACAG 267474
Query 76210 ACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATT 76269
|| || || | || || || ||||| || |||| || || || || | | ||
Sbjct 267475 GCCGATCGGGATCGGCGTCCAGGGTCTGGCCGATGCCTTCATCCTGATGCGACATCCGTT 267534
Query 76270 TGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATC 76329
|| |||||| || | | || | ||||| || ||||| || ||||| |
Sbjct 267535 CGAAAGCCCCGAAGCCCAGCTGCTCAACATCCAGATCTTCGAGACCATCTACCACGCCGC 267594
Query 76330 CCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTC 76389
||||||||| || || ||| | || | || | || |||| ||||| | ||||| |
Sbjct 267595 CCTGGAGGCCAGCTGCGAACTCGCCGCAGAGCTCGGCCCCTACGAGACGTACGAGGG--C 267652
Query 76390 TCCCGCGTC-CCAAGGG-GTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGC-TCAA 76446
|| | | || |||||| | || |||| || ||||||| || || ||| | | |
Sbjct 267653 TCGCCCATCAGCAAGGGCATCCTCCAGTACGACATGTGGG-AGAAGACACCGACCGACCT 267711
Query 76447 CTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTT 76506
| |||||| | | || ||||| ||| | | || | | ||||| || |
Sbjct 267712 GTGGGACTGGAAGCTGCTGAAGGAGAAGATCGCCAAACACGGCGTGAGGAACAGCCTGCT 267771
Query 76507 GATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 76566
| |||| || ||||| || || |||||||| || ||| |||| || || || | | | ||
Sbjct 267772 GCTGGCGCCCATGCCCACGGCGTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGA 267831
Query 76567 ACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAA 76626
| ||||| | ||||||||| | || || | || ||||| || |||||
Sbjct 267832 GGCGTACACCAGCAACATCTACACCCGCAGGGTGCTGTCCGGAGAGTTCCAGATCGTCAA 267891
Query 76627 CAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAG 76681
| |||||| |||| ||||| | | || ||| || ||| | |||| ||||||
Sbjct 267892 CCCTCACCTCCTCAAGGACCTGACGGAGCGTGGCCTGTGGAACGAGGAGATGAAG 267946
>seq120
Length=551038
Score = 91.5 bits (100), Expect = 2e-13
Identities = 100/133 (75%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 65077 GAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCT 65136
||||| ||| | || || || |||||||| ||||||||||| || |||||| |||
Sbjct 520275 GAGCGTCTTGTGGCTTTCGCAGCAGTGGAGGGGATCTTCTTCTCAGGCTCATTCGCTGCT 520334
Query 65137 ATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATT 65196
|| || ||| |||||||| | || |||||||||||||| || ||| || ||||| |||
Sbjct 520335 ATCTACTGGCTGAAGAAGAGAGGCCTCATGCCAGGCCTTACCTACTCCAACGAACTCATT 520394
Query 65197 TCCCGAGATGAGG 65209
| | || ||||
Sbjct 520395 AGCAGGGACGAGG 520407
>seq541
Length=321934
Score = 82.4 bits (90), Expect = 9e-11
Identities = 117/165 (71%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 76189 AAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATT 76248
|||||| || | ||| ||||| |||||||| | ||||| || ||||| || |||| ||
Sbjct 159840 AAAGTCCAACAAGCGTCACAGGCCTATTGGAATCGGTGTGCAGGGTCTGGCTGATGCCTT 159781
Query 76249 TATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTT 76308
||| | |||||| ||||||| || ||| || | || || |||||
Sbjct 159780 TATCCTCATGCGCTACCCATTTGAAAGCCCAGAGGCCCAGTTACTCAACATTCACATCTT 159721
Query 76309 TGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGC 76353
||||||||| || |||| |||||||||| |||||||| ||||
Sbjct 159720 TGAAACCATCTACTACGCCGCCCTGGAGGCCAGTTGTGAGCTGGC 159676
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596434588842400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |