Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq406 163 3e-35 seq120 91.5 2e-13 seq541 82.4 9e-11 >seq406 Length=364117 Score = 163 bits (180), Expect = 3e-35 Identities = 950/1495 (64%), Gaps = 50/1495 (3%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||| |||| | | || ||||||||| ||||||||| ||| | Sbjct 266477 CCGCAGCACATGCTCATGAGGGTGTCGGTTGGGATCCACGGGCGAGACATTGACGCTGCC 266536 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | ||||| ||| || |||| | | || ||||| ||||| | || |||||||| Sbjct 266537 ATCGAGACCTACAACCTCCTGTCGGAGAAGTG-GTTCACCCACGCCTCTCCGACCCTCTT 266595 Query 75331 CAATGCTGGTAC--ACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388 ||| || || || ||| | |||||| ||||||| |||||||| | |||| ||||| Sbjct 266596 CAACGCCGGGACCAACC--GGCCGCAGCTGTCCAGCTGCTTCCTGCTTGCCATGAAGGAC 266653 Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 75448 ||| ||| | || ||||| | || || | | |||| |||| || || |||| ||| Sbjct 266654 GACAGCATCGAAGGCATCTACGACACCCTGAAGCAGTGCGCGCTCATTTCCAAGTCCGCT 266713 Query 75449 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAAT------AAATCTCGTATTCGG 75502 ||||| || || || | ||| || | || || || || ||| Sbjct 266714 GGGGGGATCGGCGTG----GCGGTGAGCTG-CATCCGATCGACGGGAAGCT-ACATTGCC 266767 Query 75503 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 75562 || || || || | || | || | | || ||||| | || | ||| ||| || Sbjct 266768 GGCACCAACGGCAACTCCAACGGATTGGTCCCGATGCTGAGAGTTTACAACAACACGGCT 266827 Query 75563 CGCTATGTAAATCAAGCGGGGCGTC-GCAAG------GGGTCCATCGCGGTCTACTTGGA 75615 ||||| | || | | ||||| | |||| ||| || | || | ||| |||| Sbjct 266828 CGCTACG----TCGACCAGGGCGGCAACAAGAGACCCGGGGCCTTTGCCATGTACCTGGA 266883 Query 75616 ACCATGGCATGCCGATATCATGGAGTTCCTTGAG-TTACGACTCAACCAAGGTGACGAAG 75674 ||| ||||| ||| | | || ||||| ||| | | || ||| ||| | || | Sbjct 266884 ACCGTGGCACTTCGACGTGTTCGACTTCCTGGAGCTGAAGA-AGAACACAGGAAAGGAGG 266942 Query 75675 AGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGG 75734 || | ||||| || || | || ||||||| || ||||| ||||||||| | | Sbjct 266943 AGCAGAGAGCCAGAGACCTTTTCTACGCCTTGTGGATCCCGGACCTGTTCATGAAGAGAG 267002 Query 75735 TTG--AGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGA 75792 | | || | || | ||||| | | ||||| | || || || || ||| Sbjct 267003 TGGAAAGCAACCAGG--ACTGGTCCTTGATGTGTCCCAGCGAGTGTCCTGGGCTGGACGA 267060 Query 75793 -CGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCA 75851 || | ||| |||||||| || |||||||| | ||||| |||| || || | | Sbjct 267061 GTGCTG-GGGAGAGGAGTTCGAGAAGCTCTACACCAGATATGAGAAGGAAGGGAGGGTGA 267119 Query 75852 ATGCGACTGTACCAGCCGCCG-ATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACT 75910 | | | || || ||| | | | ||| | || || || | || ||||| || || Sbjct 267120 A-GAGGGTGGTGAAGGCGCAGCAGCTCTGGTACGCCATCATCGAGTCCCAGACCGAAACC 267178 Query 75911 GGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTG 75970 || || || || ||||| |||||||| ||||| |||| |||||| ||||| |||| || Sbjct 267179 GGGACGCCCTACATGCTCTACAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGAACCTG 267238 Query 75971 GGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030 || || ||||| || || || ||||| || | | |||||||| ||||| ||| Sbjct 267239 GGCACCATCAAATGCAGCAACCTCTGCACAGAGGTGGTGGAGTACACCAGCAAGGACGAG 267298 Query 76031 ACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGC 76090 ||| || ||||| |||| || |||||||| | ||| |||| |||| || Sbjct 267299 GTGGCCGTCTGCAACCTGGCCTCCATCGCCCTCAACATGTACGTCACGCCAGAG---CGG 267355 Query 76091 ACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGA 76150 ||||| || | | || || |||| ||| | | ||||| || ||| Sbjct 267356 ACTTTCGACTTCAAGAAGCTGGCCTCCGTCACCAAGGTAATCGTGAAAAACCTCAACAAG 267415 Query 76151 GTCATTGACAGAAATTTTTATCCCGT-TGAGACTGCGCGAAAGTCTAATATGCGACACAG 76209 |||| |||| |||| || || || || || | | ||| || | ||| ||||| Sbjct 267416 ATCATCGACATCAATTACTACCCGGTCCCCGAAGCCGAG-ACGTCCAACAAGCGCCACAG 267474 Query 76210 ACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATT 76269 || || || | || || || ||||| || |||| || || || || | | || Sbjct 267475 GCCGATCGGGATCGGCGTCCAGGGTCTGGCCGATGCCTTCATCCTGATGCGACATCCGTT 267534 Query 76270 TGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATC 76329 || |||||| || | | || | ||||| || ||||| || ||||| | Sbjct 267535 CGAAAGCCCCGAAGCCCAGCTGCTCAACATCCAGATCTTCGAGACCATCTACCACGCCGC 267594 Query 76330 CCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTC 76389 ||||||||| || || ||| | || | || | || |||| ||||| | ||||| | Sbjct 267595 CCTGGAGGCCAGCTGCGAACTCGCCGCAGAGCTCGGCCCCTACGAGACGTACGAGGG--C 267652 Query 76390 TCCCGCGTC-CCAAGGG-GTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGC-TCAA 76446 || | | || |||||| | || |||| || ||||||| || || ||| | | | Sbjct 267653 TCGCCCATCAGCAAGGGCATCCTCCAGTACGACATGTGGG-AGAAGACACCGACCGACCT 267711 Query 76447 CTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTT 76506 | |||||| | | || ||||| ||| | | || | | ||||| || | Sbjct 267712 GTGGGACTGGAAGCTGCTGAAGGAGAAGATCGCCAAACACGGCGTGAGGAACAGCCTGCT 267771 Query 76507 GATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 76566 | |||| || ||||| || || |||||||| || ||| |||| || || || | | | || Sbjct 267772 GCTGGCGCCCATGCCCACGGCGTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGA 267831 Query 76567 ACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAA 76626 | ||||| | ||||||||| | || || | || ||||| || ||||| Sbjct 267832 GGCGTACACCAGCAACATCTACACCCGCAGGGTGCTGTCCGGAGAGTTCCAGATCGTCAA 267891 Query 76627 CAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAG 76681 | |||||| |||| ||||| | | || ||| || ||| | |||| |||||| Sbjct 267892 CCCTCACCTCCTCAAGGACCTGACGGAGCGTGGCCTGTGGAACGAGGAGATGAAG 267946 >seq120 Length=551038 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 65077 GAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCT 65136 ||||| ||| | || || || |||||||| ||||||||||| || |||||| ||| Sbjct 520275 GAGCGTCTTGTGGCTTTCGCAGCAGTGGAGGGGATCTTCTTCTCAGGCTCATTCGCTGCT 520334 Query 65137 ATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATT 65196 || || ||| |||||||| | || |||||||||||||| || ||| || ||||| ||| Sbjct 520335 ATCTACTGGCTGAAGAAGAGAGGCCTCATGCCAGGCCTTACCTACTCCAACGAACTCATT 520394 Query 65197 TCCCGAGATGAGG 65209 | | || |||| Sbjct 520395 AGCAGGGACGAGG 520407 >seq541 Length=321934 Score = 82.4 bits (90), Expect = 9e-11 Identities = 117/165 (71%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 76189 AAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATT 76248 |||||| || | ||| ||||| |||||||| | ||||| || ||||| || |||| || Sbjct 159840 AAAGTCCAACAAGCGTCACAGGCCTATTGGAATCGGTGTGCAGGGTCTGGCTGATGCCTT 159781 Query 76249 TATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTT 76308 ||| | |||||| ||||||| || ||| || | || || ||||| Sbjct 159780 TATCCTCATGCGCTACCCATTTGAAAGCCCAGAGGCCCAGTTACTCAACATTCACATCTT 159721 Query 76309 TGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGC 76353 ||||||||| || |||| |||||||||| |||||||| |||| Sbjct 159720 TGAAACCATCTACTACGCCGCCCTGGAGGCCAGTTGTGAGCTGGC 159676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596434588842400