Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq406 187 2e-42 seq619 114 1e-20 seq1594 113 4e-20 >seq406 Length=364117 Score = 187 bits (206), Expect = 2e-42 Identities = 974/1526 (64%), Gaps = 49/1526 (3%) Strand=Plus/Minus Query 138501 GTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGG 138560 ||| | || ||| || || |||| || || | || ||| |||||| ||||| | | Sbjct 267892 GTTGACGATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGC 267833 Query 138561 CTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCAC 138620 ||| | || |||||||| ||||| ||||| || |||| ||| || |||||| ||||| Sbjct 267832 CTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAG 267773 Query 138621 CAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCA 138680 || || |||| | ||||| ||| ||||| ||| | ||||||||| Sbjct 267772 CAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCA 267713 Query 138681 CAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACT 138740 || ||| | ||| | || | |||||| |||||||| | || ||| || ||| Sbjct 267712 CAGGTCGGTCGGTGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGATGGGCGA 267653 Query 138741 GCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGC 138800 ||| ||||||| ||||| || | |||| || | ||| ||| ||||| || || Sbjct 267652 GCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGTTCGCAGCTGGCCTCCAGGGC 267593 Query 138801 ACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTA 138860 | | ||| || || ||| ||||| ||||||| |||| |||| ||| ||| | Sbjct 267592 GGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGGGCTTCGGGGCTTTCGAA 267533 Query 138861 CGGCATG-CGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGC 138919 ||| ||| || | || |||| || |||||||| || || ||||| | |||| || | Sbjct 267532 CGG-ATGTCGCATCAGGATGAAGGCATCGGCCAGACCCTGGACGCCGATCCCGATCGGCC 267474 Query 138920 GATGGCGCAGATTTGACGCTTTTGCGGCTTC---GATAGGATAATAGTTTACATCGATGA 138976 |||||| || |||| | ||||||| || || || || || | ||||||| Sbjct 267473 TGTGGCGCTTGTTGGACG---TCTCGGCTTCGGGGACCGGGTAGTAATTGATGTCGATGA 267417 Query 138977 TTTTGTTTAAATTTCGCACGACCACCTTAGT--CGTATGCTTTAATCGTTCAAAATCGTA 139034 | ||||| | ||| ||||| ||||| || || | || || | || ||| | Sbjct 267416 TCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTC--TTGAAGTCGAA 267359 Query 139035 TGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTT 139094 || || | || ||| ||||| ||| |||||| || ||||| | ||| Sbjct 267358 AGT--CCGCTCTGGCGT----GACGT--ACA----TGTTGAGGGCGATGGAGGCCAGGTT 267311 Query 139095 GCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACA 139154 ||| || ||||| ||||| | | |||| || || | || | || | || || || Sbjct 267310 GCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCTGTGCAGAGGTTGCTGCA 267251 Query 139155 CTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCAT 139214 ||||| || || | || || || ||||| || | ||| ||||| || ||||| ||||| Sbjct 267250 TTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCAT 267191 Query 139215 ATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTG 139274 || || || || ||||| || | ||| || ||| | | | | | || | Sbjct 267190 GTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGCGCCTT 267131 Query 139275 TATTTGACGCACGTAAAGTT--CGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAA-TCG 139331 | || | | | | | | || ||| || | |||||| | ||||| || Sbjct 267130 CA--CCACCCTCTTCACCCTCCCTTCCTTCTCATATCTGGTGTAGAGCTTCTCGAACTCC 267073 Query 139332 T-TCACC-GTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACG 139389 | || || | | |||| || | |||||| | |||||||| | ||||| | Sbjct 267072 TCTCCCCAGCACTCGTC---CAGCCCAGGACACTCGCTGGGACACATCAAGGACCAGTC- 267017 Query 139390 CCGTTCGCCTT-GACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATC 139448 | | | || || || | | |||||||||| ||||| |||||||| ||| | | | || Sbjct 267016 CTGGTTGCTTTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGCGTAGAAAAGGTC 266957 Query 139449 GCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTC 139508 | || ||| || ||| || |||| |||| | ||||| || || ||||| Sbjct 266956 TCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTC 266897 Query 139509 AGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCC---TTTCCGTTTGCCACCTTGATC 139565 |||||| |||||||| || ||||| | || || | || ||||| || || || Sbjct 266896 GAAGTGCCACGGTTCCAGGTACATGGCAAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTC 266837 Query 139566 GACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCC 139625 ||||| || | | || ||| | || | || |||||| ||| ||| | | | || Sbjct 266836 GACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCGTTGGAGTTGCC 266777 Query 139626 GTTGGTGCTACGG--ATGGGACTGTTGCG-AGCTCGGACGTCATGT-ACATTGATGCCGA 139681 |||||||| ||| ||| || | || | ||||| | || | || | ||||| Sbjct 266776 GTTGGTGC--CGGCAATGTAGCT-TCCCGTCGATCGGATG-CAGCTCACCGCCACGCCGA 266721 Query 139682 TTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGT-AATGTCTCGTATATACCTCTT 139740 | || || | | ||||| || | |||| | || | | || ||||| || ||| Sbjct 266720 TCCCCCCAGCGGACTTGGAAATGAGCGCGCACT-GCTTCAGGGTGTCGTAGATGCCTTCG 266662 Query 139741 ATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCG 139800 ||||||||||||| ||| | | ||| ||||| || || ||||| | || || ||| Sbjct 266661 ATGCTGTCGTCCTTCATGGCAAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCG 266602 Query 139801 GCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTT 139860 || || || || ||| ||||| |||||| | | ||||| | | ||| || Sbjct 266601 GCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGTAGGTC 266542 Query 139861 TCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGT 139920 |||||||| |||| || | |||||||| || || || || | ||| ||||| || Sbjct 266541 TCGATGGCAGCGTCAATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGC 266482 Query 139921 TGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTCTCTAGGGTCTTG 139980 || ||| |||||||| || | ||| || ||| || | ||| || |||||| Sbjct 266481 TGCGGCCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCCAGAGTCTTG 266422 Query 139981 TAGCCAAAGTACCTATAGTTGAAATC 140006 | || ||| | | ||| |||||| Sbjct 266421 AAACCGAAGAAGTTGTAGGAGAAATC 266396 >seq619 Length=304156 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | ||||| || || || || || ||||| || || || || ||| Sbjct 191589 GATGCAGATTTTCGTGAAAACTCTCACTGGGAAGACCATTACCCTGGAGGTGGAGCCCAG 191648 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||| || || |||||||| || ||||| || || Sbjct 191649 TGACACCATTGAGAACGTGAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGACCA 191708 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| || ||||||||||| ||| | | | |||| || || || Sbjct 191709 GCAGAGACTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCGGACTACAA 191768 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || || ||| ||||| | || || | ||||| Sbjct 191769 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGAGGGGAGG 191816 >seq1594 Length=294527 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | ||||| || ||||| ||||| || || || || || || ||| Sbjct 188451 GATGCAGATCTTTGTGAAAACCCTCACCGGCAAAACCATCACCCTTGAGGTGGAGCCCAG 188392 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| || || || || || || || || || Sbjct 188391 TGACACCATTGAGAATGTTAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCA 188332 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||||| || |||||||| ||| | | | |||| || || || Sbjct 188331 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 188272 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || || ||||| ||||| ||| |||| Sbjct 188271 CATCCAGAAAGAATCCACACTCCACCTGGT 188242 Score = 109 bits (120), Expect = 5e-19 Identities = 152/209 (73%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| ||||| || || || || || ||| ||| | Sbjct 184486 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAACCCAGC 184427 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | ||| ||||| || || || || || || || || || Sbjct 184426 GACACCATTGAGAACGTCAAAGCCAAA-ATCCAGGATAAGGAGGGCATCCCCCCTGACCA 184368 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||||| || |||||||| ||| | | | |||| || || || Sbjct 184367 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 184308 Query 24883 CATTCAAAAGGAATCGACACTACA-CTTG 24910 || ||||| ||||| || || || |||| Sbjct 184307 TATCCAAAAAGAATCCACCCTCCATCTTG 184279 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || || ||||| || ||| Sbjct 184030 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 183971 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || ||||| || || || || || || || || || Sbjct 183970 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 183911 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||||| || |||||||||||| | | |||| ||||| ||| Sbjct 183910 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGATTACAAC 183851 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 || || || ||||| || || ||| Sbjct 183850 ATCCAGAAAGAATCTACCCTCCAC 183827 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || || || || || ||| | Sbjct 184258 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 184199 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || || || || || || || || Sbjct 184198 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 184139 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| ||| | | | |||| || || ||| Sbjct 184138 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 184079 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| || || || ||| |||| Sbjct 184078 ATCCAGAAGGAGTCCACCCTTCACCTGGT 184050 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| ||||| || || || || || || ||| Sbjct 188222 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTTGAGCCCAGT 188163 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || | ||| ||||| || || || || || || || || || Sbjct 188162 GACACCATTGAGAACGTCAAGGCCAAA-ATCCAGGATAAGGAGGGCATCCCCCCTGACCA 188104 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||||| || |||||||| ||| | | | | || || || || Sbjct 188103 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAA 188044 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 ||| || ||||| || || || ||| Sbjct 188043 CATCCAGAAGGAGTCCACCCTCCAC 188019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449795782549400