Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13]
18,105 sequences; 801,711,499 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq1594 150 1e-31
seq619 132 3e-26
>seq1594
Length=294527
Score = 150 bits (166), Expect = 1e-31
Identities = 178/241 (74%), Gaps = 5/241 (2%)
Strand=Plus/Plus
Query 34743 AATCATTTCCT-----CCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAAT 34797
|||||||| || ||||||| | || || ||||| | |||| ||||||||| ||
Sbjct 187983 AATCATTTACTGGCCACCCCTCAGACGGAGAACAAGGTGGAGGGTGGACTCCTTCTGGAT 188042
Query 34798 GTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTG 34857
||| ||||| || ||| |||| |||| ||||| ||||||||||| |||||||| | ||
Sbjct 188043 GTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTG 188102
Query 34858 CTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTC 34917
|||||| | || | |||||||| || | ||||| |||||| | || | ||
Sbjct 188103 CTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTC 188162
Query 34918 ATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
| ||| ||| || || | ||| ||||| || || ||||||||||| || |||||||||||
Sbjct 188163 ACTGGGCTCAACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 188222
Query 34978 G 34978
|
Sbjct 188223 G 188223
Score = 145 bits (160), Expect = 5e-30
Identities = 160/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||||||||| |||| ||||||||| ||||| ||||| || ||| |||| ||||
Sbjct 184047 AGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 184106
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| ||||| || || |||||||| | |||||||| | || | |||||||| ||
Sbjct 184107 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 184166
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | || | || ||| ||| || || | ||| ||||||
Sbjct 184167 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTC 184226
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|| || ||||||||||| || ||||||||||||
Sbjct 184227 TTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 184259
Score = 132 bits (146), Expect = 3e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| ||||||| | ||||| || || | |||| || || || || || ||||| ||
Sbjct 184260 CCACCCCTCAGACGGAGGACAAGATGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGAC 184319
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
||| |||| |||| ||||| ||||||||||| |||||||| | |||||||| | ||
Sbjct 184320 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 184379
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930
| |||||||| || | ||||| ||||||| | || | || ||| || ||
Sbjct 184380 ATGCCCTCCTTATCCTGGATTTTGGCTTTGACGTTCTCAATGGTGTCGCTGGGTTCCACC 184439
Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|| | ||| ||||| || || ||||||||||| |||||||||||||||
Sbjct 184440 TCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCATG 184487
Score = 132 bits (146), Expect = 3e-26
Identities = 159/214 (74%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||||||| | ||| || ||||| ||||| ||||| || ||| |||| ||||
Sbjct 188239 AGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 188298
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| ||||||||||| |||||||| | |||||||| | || | |||||||| ||
Sbjct 188299 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 188358
Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943
| || || || || || || || | ||| ||| ||| || |||| ||| ||||
Sbjct 188359 TGGATCTTGGCCTTAAC--ATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGG 188416
Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
| || || |||||||| || ||||||||||||||
Sbjct 188417 TTTTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 188450
Score = 125 bits (138), Expect = 5e-24
Identities = 167/230 (73%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| ||||||| | || || ||||| | ||| || ||||| ||||| || || ||
Sbjct 183804 CCACCCCTCAGACGGAGAACAAGGTGGAGGGTAGATTCTTTCTGGATGTTGTAATCGGAC 183863
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| |||| |||| ||||| ||||| ||||| |||||||| | |||||||| | ||
Sbjct 183864 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 183923
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928
| |||||||| || | ||||| ||||| || || || | ||| ||| ||| |
Sbjct 183924 ATGCCCTCCTTATCCTGGATTTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCAA 183981
Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
| || | ||| |||||||| || ||||||||||| || ||||||||||||
Sbjct 183982 CTTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 184031
>seq619
Length=304156
Score = 132 bits (146), Expect = 3e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 34750 TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809
||||||||||| | || |||||||| | |||| ||||||||| ||||| ||||||||
Sbjct 191817 TCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 191758
Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869
||| |||| |||| ||||| || || || || |||||||||| |||||||| | ||
Sbjct 191757 CAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGG 191698
Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGAC 34929
| || || || || | || ||| || ||| | || | ||| ||| ||| ||
Sbjct 191697 AATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCAC 191638
Query 34930 ATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| | ||| |||||||| || ||||| || || || || ||||||||
Sbjct 191637 CTCCAGGGTAATGGTCTTCCCAGTGAGAGTTTTCACGAAAATCTGCAT 191590
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325620934356995
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |