Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq308 233 1e-55 seq1972 93.3 3e-13 >seq308 Length=648844 Score = 233 bits (258), Expect = 1e-55 Identities = 939/1470 (64%), Gaps = 18/1470 (1%) Strand=Plus/Plus Query 281416 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 281475 ||| || |||| | |||||| || || || ||||| || | |||||| || |||||||| Sbjct 187296 TTTGTCGACGGCGGACACATTTAGGATGCCGTTGGCGTCGATATCAAAGGTAACTTCAAT 187355 Query 281476 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 281535 || || || ||||| ||||||| || | || | | ||| | ||||| ||| Sbjct 187356 CTGTGGCACGCCTCTGGGAGCAGGAGGAAGACCAGAGAGCTCAAACTTCCCCAGGAGATT 187415 Query 281536 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 281595 || || || || | || ||||||||| | | || || ||| | | || || Sbjct 187416 GTTGTCCTTTGTCATGGCTCTCTCACCCTCGTAGACCTGAATCAAGACTCCTGGCTGGTT 187475 Query 281596 ATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGA-ATTGTTGTGTTTCTATCAA 281654 |||||| || || | || | |||| | | | | || || || ||||||| | | Sbjct 187476 ATCTGAGTATGTGGAGAAGA-TCTGAGTCTGCTTCGTGGGGATGGTGGTGTTTCGCTTGA 187534 Query 281655 TAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 281714 ||| | ||||||| ||||| |||||||| | || || || | |||| ||||| | Sbjct 187535 TAAGAGGTGTCATAACGCCACCGGCTGTTTCAATGCCCAGCGACAAGGGAGCCACATCCA 187594 Query 281715 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 281774 || | | || ||| | ||||| || | ||| | || ||||| || || | | Sbjct 187595 GGAGCAGTAAATCTTGGACATTTTCTGAGGTGTCACCCATGAGGATAGCAGCCTGGACGG 187654 Query 281775 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 281834 | |||||||| || || || |||||||| || | | | ||||| | | ||||||||| Sbjct 187655 CTGCACCATAGGCCACCGCCTCATCAGGGTTGATGCTCTTGTTTAGCTCTCTACCATTGA 187714 Query 281835 AAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAA 281894 | || | || || | | | || || || | | || || ||||||| |||| Sbjct 187715 AGAAGTCCTGCAGGAGCTTTTGGATTTTGGGGATTCTTGTAGAGCCGCCAACTAGGACAA 187774 Query 281895 TTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA 281954 ||| || | || ||||||||||| || | ||| || | || ||||| || || | Sbjct 187775 CTTCGTGGATCTTGGATTTATCCAGCTTAGCATCTTGTAGGGCCTTCTCAACTGGCTCCA 187834 Query 281955 GACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT 282014 | | || || | ||| || || || ||||| || || || || ||| | Sbjct 187835 GTGTTCCCCTGAAGAGGTCCGAGTTGAGCTCCTCGAAGCGTGCCCTTGT--GATTGAGGT 187892 Query 282015 -TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTC--GAAGAA 282070 || || ||||| || || || | ||||||| ||||| | | ||||| | || | Sbjct 187893 GTAAAAGTCAATGCCCTCAAAGAGTGAATCAATCTCAATGCTTGCCTGAGTGCTGGAGGA 187952 Query 282071 GATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTT----TGC 282126 | ||| | | || || | || || ||||| | ||||| | | ||| | | | Sbjct 187953 CAAAGTCCTCTTT--GCTCTCTCGCAAGCTGTGCGCAGTCTCCTCACCGCTCTCTTGTTC 188010 Query 282127 TGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAG 282186 || |||| || | || | ||||| || || || || ||| | | || | Sbjct 188011 TGGCTGATG----TCCTTCTTGTGCTTTCTTTTAAACTCCTCCACAAAGTGGCTGACCAT 188066 Query 282187 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 282246 || || |||||||| || || || | | || | || | || ||| | || | || Sbjct 188067 TCGGTTGTCAAAATCCTCCCCACCAAGGTGTGTGTCCCCGGCTGTGGCTTTCACCTCAAA 188126 Query 282247 AAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAAT 282306 | || || |||| | || | | || ||| || || ||||| | |||||| || Sbjct 188127 TATGCCGTCCTCAATGGTCAGGATGGACACGTCAAAAGTGCCTCCACCAAGATCAAAGAT 188186 Query 282307 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 282366 || || || ||| || | ||| ||||| ||||| |||| || || || || Sbjct 188187 GAGGACGTTGCGCTCTCCTCTTTTGCCTTTGTCAAGGCCATAGGCAATGGCTGCCGCTGT 188246 Query 282367 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 || ||||| || || | | |||||| || || | || ||| ||||| || ||||| Sbjct 188247 CGGCTCATTTATGATGCGGAGAACATTTAGTCCGGAGATCACTCCAGCATCCTTTGTGGC 188306 Query 282427 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTT 282486 ||| ||||| ||||| ||||| || || || || || || || |||| | || | Sbjct 188307 TTGCCTTTGGGAATCATTAAAGTAAGCTGGCACTGTGATGACCGCATTCGACACCCTCTG 188366 Query 282487 TCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTC 282546 ||| | | | || ||| ||| | |||||||| | | ||| || ||||||| ||| Sbjct 188367 TCCCAGAAAGGCCTCGGCTATTTCTCTCATTTTAACCAGGACCATCGAGGAAATTTCTTC 188426 Query 282547 TGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAAC 282606 ||| | || ||| ||| || |||| || | | | || || | Sbjct 188427 AGGACAGAATGTCTTAATTTCTCCTTTATATTCCACCTGGACTTTGGGCTTTCCGTTGTC 188486 Query 282607 ATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATC 282666 || || || || || ||||| |||||| || || || || |||||| ||| Sbjct 188487 GTTGATCACCTTGAAGGGCCAGAGTTTCATGTCAGACTGGACCACCAGGTCATCAAACCT 188546 Query 282667 TCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATA 282726 ||| ||||| | ||||| |||||||| || || ||||| || || | ||| |||| | Sbjct 188547 TCTTCCAATGAGCCGTTTGGCATCAAAGATCGTGTTGGTGGGGTTCATGGCAACTTGGTT 188606 Query 282727 TTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGT 282786 ||||| |||||||| || || ||||| || ||||| | || || |||||||| Sbjct 188607 CTTGGCAGCATCTCCGATGAGCCTCTCTGTGTCAGTAAAGGCCACGTAGCTGGGAGTTGT 188666 Query 282787 GCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 282846 | || ||||||||||| ||||||||||| ||||| |||| || | || || ||||| Sbjct 188667 CCTGTTGCCTTGATCATTGGCAATAATTTCCACTTTTCCATGCTGGAAGACCCCGACACA 188726 Query 282847 ACTAAAAGTTGTTCCTAAATCAATACCAAT 282876 | | || || || | |||||| ||||| Sbjct 188727 AGAGTAGGTGGTGCCCAGATCAATGCCAAT 188756 >seq1972 Length=117583 Score = 93.3 bits (102), Expect = 3e-13 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||||| || ||||| || || | ||| | |||| |||||||| ||||||||||| Sbjct 23498 CAAAAACTGTGTTGGTAGGGTTCATGGCAACCTGATTCTTGGCTGCGTCTCCAATCAGTC 23439 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 || || ||||| || | ||||| || || || | || ||||| ||||| |||| Sbjct 23438 TCTCGGTATCTGTGAAAGCCACATAGCTGGGTGTGGTCCTGTTGCCTTGGTCATTGGCAA 23379 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||||||||| |||| || | ||||| ||||| | || ||||| | ||| | Sbjct 23378 TGATTTCAACTTTGCCATGCTGGAACACACCAACACAGGAGTAGGTGGTTCCAAGATCGA 23319 Query 282870 TACCAA 282875 | |||| Sbjct 23318 TTCCAA 23313 Score = 91.5 bits (100), Expect = 1e-12 Identities = 109/147 (74%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || || ||||| || | |||||| |||||||||||||| || || | ||||||| Sbjct 24132 TTCTTGTCCAGCCCATAGGCGATAGCAGCTGCAGTTGGTTCATTGATTATACGCAAAACA 24073 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||| || | || ||||| || ||||| || | || || || || || || Sbjct 24072 TTGAGGCCAGAGATGGTGCCAGCATCCTTGGTGGCCTGACGCTGGGAGTCATTGAAGTAA 24013 Query 282452 GCAGGAACAGTAATAACGGCATCTGTT 282478 ||||| || || || || |||| |||| Sbjct 24012 GCAGGTACTGTGATCACAGCAT-TGTT 23987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739741521011730