Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq406 347 1e-90 seq1594 138 1e-27 seq619 122 8e-23 seq541 91.5 1e-13 >seq406 Length=364117 Score = 347 bits (384), Expect = 1e-90 Identities = 1013/1538 (66%), Gaps = 48/1538 (3%) Strand=Plus/Minus Query 148231 GCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGC 148290 |||| ||||||| | || || | | || || | ||| ||||| |||| ||||| | Sbjct 267920 GCTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCC 267861 Query 148291 GCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCG 148350 || || | |||||| || ||| || | |||||||||||||||| ||||| | Sbjct 267860 TGCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGG 267801 Query 148351 CGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTA 148410 |||| | |||||||||||| ||| | |||||| ||| | || ||| | || | Sbjct 267800 CGGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGA 267741 Query 148411 TTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGT 148470 | || |||||| | ||||||||| || | ||||||| | ||||||||||| Sbjct 267740 TCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTCGGTGTCTTCTCCCACATGTCGT 267681 Query 148471 ACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCG 148530 |||| || ||||| ||| ||| ||||||||||| ||| || ||| || | | Sbjct 267680 ACTGGAGGATGCCCTTGCTGATGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTG 267621 Query 148531 CCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGT 148590 | || ||||||||||| ||||| || ||| ||| ||| || |||||| || || ||| Sbjct 267620 CGGCGAGTTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGT 267561 Query 148591 TGAGCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAA 148650 |||||||| || ||||||| |||| |||| | | | || || ||||| | Sbjct 267560 TGAGCAGCTGGGCTTCGGGGCTTTCGAACGGATGTCGCATCAGGATGAAGGCATCGGCCA 267501 Query 148651 GGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTC-- 148708 | ||||| ||||| | || || |||| ||| ||||||| | | || ||| || Sbjct 267500 GACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGA-CGTCTCG-GCT-TCGG 267444 Query 148709 -GAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAA 148767 || ||| |||| ||| |||||||||||||| || || ||| | ||||| || | Sbjct 267443 GGACCGGGTAGTAATTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGA 267384 Query 148768 TTCTGCGCAGCAATTCAAAATCGTACTTGTCATCT------ACGATGCATCGGTTCACGG 148821 | |||| | || ||| | | ||| ||| | ||| ||| | || Sbjct 267383 CGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACG-TACAT--GTTGAGGG 267327 Query 148822 CGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGG 148881 |||| ||||| || ||||| |||||| ||| ||| | | ||||||| || | ||| | Sbjct 267326 CGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCTG 267267 Query 148882 CGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACG 148941 ||| || |||||||||||||| ||||| ||||| || |||||||| |||||||| | Sbjct 267266 TGCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAG 267207 Query 148942 CGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGAT 149001 |||||||||| |||||||| || || ||||| ||| | || | ||| || Sbjct 267206 CGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATG--GCGTA 267149 Query 149002 GC--AGGTCCTGCGCGCGCACTTGCTGCTCGT-AGCGACCC-TCCTGCTCGTATAAAGTA 149057 | || | |||||| ||| | ||| | | | ||| |||| ||| ||| || Sbjct 267148 CCAGAGCTGCTGCGCCTTCACCACC--CTCTTCACCCTCCCTTCCTTCTCATATCTGGTG 267091 Query 149058 TACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCAC 149117 || ||| ||||||| |||| || |||| ||||| || || || |||| | || ||| Sbjct 267090 TAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACACTCGCTGGGACAC 267031 Query 149118 ATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGC 149177 || | ||||| | || | ||| | |||||| ||||| || || | ||| | Sbjct 267030 ATCAAGGACCAGTCCTGGTTGCTTTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAG 266971 Query 149178 GCGTACATGAGGTCGC--GCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGA 149235 ||||| | ||||| | || | ||| || || || |||| ||| | | Sbjct 266970 GCGTAGAAAAGGTCTCTGGCTCTCTGC--TCCTCCTTTCCTGTGTTCTTCTTCAGCTCCA 266913 Query 149236 GCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCC------CT 149289 | | | ||| | ||| ||||||||| || | ||||| || | || || || Sbjct 266912 GGAAGTCGAACACGTCGAAGTGCCACGGTTCCAGGTACATGGCAAAGGCCCCGGGTCTCT 266853 Query 149290 TGCGCTTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTT 149349 || ||||||||||||||||||| ||| || ||||||| | |||| | ||| || Sbjct 266852 TG---TTGCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGA 266796 Query 149350 CAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGT 149409 | | || ||| ||||||| || | |||| || || || ||| | | Sbjct 266795 CCAATCCGTTGGAGTTGCCGTTGGTGCCGGCAATGTAGCTTCCCGTCGATCGGATGCAGC 266736 Query 149410 GCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCG 149469 ||| |||||||| || || || |||| || ||| |||||| | || || Sbjct 266735 TCACCGCCACGCCGATCCCCCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGT 266676 Query 149470 AGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCG 149529 ||||||||| |||||||||||| |||||||| ||||| ||||| | ||| |||| Sbjct 266675 CGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCAAGCAGGAAGCAGCTGGACAGCTGCG 266616 Query 149530 GAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCA 149589 | || ||||| ||| | ||| || |||||| || || | |||| || Sbjct 266615 GCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACA 266556 Query 149590 TCATCTCGTACGACTCGA--GCACGCGGTCCATGTCATCG-CCATGGATGCCTATGGCGA 149646 | | ||| | ||||| ||| || ||| ||||| ||| || ||||| || | | | Sbjct 266555 GGAGGTTGTAGGTCTCGATGGCA-GC-GTCAATGTC-TCGCCCGTGGATCCCAACCGACA 266499 Query 149647 CGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTT---GTTTCCAATTTTGAGCAAGT 149703 | | ||| ||||| |||||||| ||||| |||||||| ||| || || |||| || Sbjct 266498 CCCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTCCCGTT---GATCTTCAGCAGGT 266442 Query 149704 AGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAG 149741 || | || || |||||| | || ||| | |||||| Sbjct 266441 AGGAGCGCTCCAGAGTCTTGAAACCGAAGAAGTTGTAG 266404 >seq1594 Length=294527 Score = 138 bits (152), Expect = 1e-27 Identities = 152/200 (76%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| || |||||||| || ||||||||| || ||| | | | ||||| |||||||||| Sbjct 183833 GGTAGATTCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCA-TCCTCCAGCTGCTTGC 183891 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || |||||||| ||||| || ||| || || Sbjct 183892 CGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCCT 183951 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| ||||||| || || | ||||| ||| |||||||| || | Sbjct 183952 TGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCGGTGAGGG 184011 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||| Sbjct 184012 TCTTGACGAAGATCTGCATG 184031 Score = 138 bits (152), Expect = 1e-27 Identities = 152/200 (76%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || || ||| | | | || || |||||||||| Sbjct 184061 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 184119 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || |||||||| ||||| || |||||| || Sbjct 184120 CAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCT 184179 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| |||||| ||||||| || || | ||||| ||| |||||||| || | Sbjct 184180 TGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCGGTGAGGG 184239 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||| Sbjct 184240 TCTTGACGAAGATCTGCATG 184259 Score = 129 bits (142), Expect = 6e-25 Identities = 156/207 (75%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| ||||| || |||||||| || || ||| | | | || || |||| Sbjct 184283 ATGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCT 184341 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || | || |||| ||||||||| || |||||||| ||||| || ||| | Sbjct 184342 GCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGAT-T 184400 Query 133576 TTTGCTT-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || |||| || | ||||| |||||| |||| ||||| || | ||||| |||||||||| Sbjct 184401 TTGGCTTTGACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCG 184460 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 || || || || || || ||||||||| Sbjct 184461 GTGAGGGTCTTGACAAAGATCTGCATG 184487 Score = 129 bits (142), Expect = 6e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| |||||||| || ||||| || || ||| | | | || || |||||||| || Sbjct 188254 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGCTTTCC 188312 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| || |||||||| ||||| || |||||| ||| Sbjct 188313 GGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTT 188372 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| |||||||||| || | ||||| |||||||||||| || || Sbjct 188373 AACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTGCCGGTGAGGGT 188432 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| || || |||||||| Sbjct 188433 TTTCACAAAGATCTGCAT 188450 Score = 123 bits (136), Expect = 2e-23 Identities = 149/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || | ||| | | | || || |||||||| | Sbjct 188025 GGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCA-TCTTCCAGCTGCTTTC 188083 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || |||||||| ||||| || ||| || || Sbjct 188084 CGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCCT 188143 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| ||||||| || || | ||||| |||||||||||| || | Sbjct 188144 TGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTTTTGCCGGTGAGGG 188203 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||| Sbjct 188204 TCTTGACGAAGATCTGCATG 188223 >seq619 Length=304156 Score = 122 bits (134), Expect = 8e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || || ||| | | | || || ||||| |||| Sbjct 191787 GGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCA-TCTTCCAGCTGTTTGC 191729 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || || | ||||||||| ||||| |||||||| || || |||||| || Sbjct 191728 CAGCAAAGATCAGTCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGAATCTTTGCCT 191669 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| |||||||||| || | ||| | ||| || || || |||| Sbjct 191668 TCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTCTTCCCAGTGAGAG 191609 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| |||||||||||||| Sbjct 191608 TTTTCACGAAAATCTGCAT 191590 >seq541 Length=321934 Score = 91.5 bits (100), Expect = 1e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 |||| || |||||||| | ||| ||||||||| | ||||| ||||| || | || | Sbjct 160847 TGTATTCGACGATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGT 160906 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 || |||| |||||||| ||||||||||| ||||||||||| Sbjct 160907 TGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGG 160946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483311395830200