Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq378 129 7e-25 seq76 98.7 1e-15 >seq378 Length=373364 Score = 129 bits (142), Expect = 7e-25 Identities = 250/364 (69%), Gaps = 4/364 (1%) Strand=Plus/Plus Query 162642 CACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTT 162701 ||||||||| |||||| || | ||||||||| || || ||| ||| | || ||||| Sbjct 251804 CACCATCTCCCTATTGGTTTTGATGGGAAAGTCTGTCCCACAGGTATTCAAAAGGTATTT 251863 Query 162702 CCACTTAACG-CTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 |||| ||| | |||| | |||||| | | ||||||||||| ||||| || | Sbjct 251864 CCACCGAACTTCAGAGTGCAG-CAGATCTTTCATGCAGTTCAGATCTGCCTGCACTCTGG 251922 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| || || ||||| || || || || || |||| ||||| |||||| || || | Sbjct 251923 ACCATGAAGCATACACAACACTTTCTAATTTACTGGCTACAAAAACATTGGGAAAGCAGG 251982 Query 162821 AAACTATCCCCATCAC-GGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACG 162879 ||||||| || |||| | || |||| || | | || | ||| || | || ||| Sbjct 251983 AAACTATTTCCTTCACAGCCCTGTGAAAAGA-CAGGGAAGACTTCTGGTCAATATGGACG 252041 Query 162880 CAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTA 162939 ||||| | ||||| || || || || | | || | || || |||||||||||||| Sbjct 252042 CAGTAGATGTTCTGCGGAGCATAAATAGATCGTAGGAGTCGTTCAAACATCTCTATCTTC 252101 Query 162940 TGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCT 162999 | ||| | ||| || || || || ||||| || | |||||| ||| | || | || Sbjct 252102 TCGTGGATCACCATGGAGTATGCAATGGGAAAATTTAGCTCCTCCTCACTTAAAGGCACT 252161 Query 163000 GTAA 163003 |||| Sbjct 252162 GTAA 252165 >seq76 Length=730157 Score = 98.7 bits (108), Expect = 1e-15 Identities = 236/353 (67%), Gaps = 13/353 (4%) Strand=Plus/Minus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| ||| | || || || | || | |||||| || ||||||||||| | || | Sbjct 604136 GCCAGCTCTTTGGGTGAGCTGAAATCATCCACGTGGATAAAAGCGTCTCCTTGAACAAAG 604077 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || ||||| || ||||| | || || || || | || || | |||| ||||| Sbjct 604076 TTCTCGTAGTTTTCTCTGGTCGTGCCAAGAACCACCGGCACTG----TGCCCACAGAGAG 604021 Query 177066 CGG----TAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATA 177121 || ||||||||||| || || |||||| |||| | ||||||||||| | | ||| Sbjct 604020 GGGGATGTAGAGTTTTTCTGTGATGTAGTCCTTGTGGATTGAGTTCTCAAAGGACAAATA 603961 Query 177122 GAATTTACAGGAAG--ATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACT 177179 || ||||| || |||||| |||||| | || | || | || || || || | | Sbjct 603960 AAACTTACAACTAGCCATAGTA--GGGATGTAATCTTTGTCAGCGATGTACTCCCCAAAT 603903 Query 177180 ACGTTCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATCTC 177239 | | || || |||| | || |||||||| | ||| ||| ||| || || Sbjct 603902 GCATGTCCATACGCATGAACTTCAATGTGTTTGTACAACTCGTTGTAATATTTCACTCGT 603843 Query 177240 ACGTGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC 177292 || || || ||||| |||||||||| |||||| || | ||| | ||||| Sbjct 603842 ACATGTTCAGGATTCCAGTTGCTGACGATCCAGCAGACCAGTTTG-TTTTTGC 603791 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/188 (71%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| ||| | || ||| | | || | |||||| || |||||||||| || || | Sbjct 616521 GCCAGCTCTTTGGGTGACTTAAAATCATCCACGTGGATAAAAGCGTCTCTTGGAACAAAG 616462 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATA-AGAGA 177064 || ||||| || ||||| | || || || || | || || | || |||| |||| Sbjct 616461 TTCTCGTAGTTTTCTCTGGTCGTGCCAAGAACCACTGGCACTGTGCC---CATAGAGAGG 616405 Query 177065 TCG--GTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAG 177122 | |||||||||||| || || |||||| |||| || ||||||||||| | | ||| Sbjct 616404 GGGATGTAGAGTTTTTCAGTGATGTAGTCCTTGTGGACTGAGTTCTCAAAGGACAAATAA 616345 Query 177123 AATTTACA 177130 || ||||| Sbjct 616344 AACTTACA 616337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578301093608000