Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13]
18,105 sequences; 801,711,499 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq378 129 7e-25
seq76 98.7 1e-15
>seq378
Length=373364
Score = 129 bits (142), Expect = 7e-25
Identities = 250/364 (69%), Gaps = 4/364 (1%)
Strand=Plus/Plus
Query 162642 CACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTT 162701
||||||||| |||||| || | ||||||||| || || ||| ||| | || |||||
Sbjct 251804 CACCATCTCCCTATTGGTTTTGATGGGAAAGTCTGTCCCACAGGTATTCAAAAGGTATTT 251863
Query 162702 CCACTTAACG-CTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760
|||| ||| | |||| | |||||| | | ||||||||||| ||||| || |
Sbjct 251864 CCACCGAACTTCAGAGTGCAG-CAGATCTTTCATGCAGTTCAGATCTGCCTGCACTCTGG 251922
Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820
||| || || ||||| || || || || || |||| ||||| |||||| || || |
Sbjct 251923 ACCATGAAGCATACACAACACTTTCTAATTTACTGGCTACAAAAACATTGGGAAAGCAGG 251982
Query 162821 AAACTATCCCCATCAC-GGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACG 162879
||||||| || |||| | || |||| || | | || | ||| || | || |||
Sbjct 251983 AAACTATTTCCTTCACAGCCCTGTGAAAAGA-CAGGGAAGACTTCTGGTCAATATGGACG 252041
Query 162880 CAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTA 162939
||||| | ||||| || || || || | | || | || || ||||||||||||||
Sbjct 252042 CAGTAGATGTTCTGCGGAGCATAAATAGATCGTAGGAGTCGTTCAAACATCTCTATCTTC 252101
Query 162940 TGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCT 162999
| ||| | ||| || || || || ||||| || | |||||| ||| | || | ||
Sbjct 252102 TCGTGGATCACCATGGAGTATGCAATGGGAAAATTTAGCTCCTCCTCACTTAAAGGCACT 252161
Query 163000 GTAA 163003
||||
Sbjct 252162 GTAA 252165
>seq76
Length=730157
Score = 98.7 bits (108), Expect = 1e-15
Identities = 236/353 (67%), Gaps = 13/353 (4%)
Strand=Plus/Minus
Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005
||||| ||| | || || || | || | |||||| || ||||||||||| | || |
Sbjct 604136 GCCAGCTCTTTGGGTGAGCTGAAATCATCCACGTGGATAAAAGCGTCTCCTTGAACAAAG 604077
Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065
|| ||||| || ||||| | || || || || | || || | |||| |||||
Sbjct 604076 TTCTCGTAGTTTTCTCTGGTCGTGCCAAGAACCACCGGCACTG----TGCCCACAGAGAG 604021
Query 177066 CGG----TAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATA 177121
|| ||||||||||| || || |||||| |||| | ||||||||||| | | |||
Sbjct 604020 GGGGATGTAGAGTTTTTCTGTGATGTAGTCCTTGTGGATTGAGTTCTCAAAGGACAAATA 603961
Query 177122 GAATTTACAGGAAG--ATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACT 177179
|| ||||| || |||||| |||||| | || | || | || || || || | |
Sbjct 603960 AAACTTACAACTAGCCATAGTA--GGGATGTAATCTTTGTCAGCGATGTACTCCCCAAAT 603903
Query 177180 ACGTTCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATCTC 177239
| | || || |||| | || |||||||| | ||| ||| ||| || ||
Sbjct 603902 GCATGTCCATACGCATGAACTTCAATGTGTTTGTACAACTCGTTGTAATATTTCACTCGT 603843
Query 177240 ACGTGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC 177292
|| || || ||||| |||||||||| |||||| || | ||| | |||||
Sbjct 603842 ACATGTTCAGGATTCCAGTTGCTGACGATCCAGCAGACCAGTTTG-TTTTTGC 603791
Score = 84.2 bits (92), Expect = 3e-11
Identities = 133/188 (71%), Gaps = 6/188 (3%)
Strand=Plus/Minus
Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005
||||| ||| | || ||| | | || | |||||| || |||||||||| || || |
Sbjct 616521 GCCAGCTCTTTGGGTGACTTAAAATCATCCACGTGGATAAAAGCGTCTCTTGGAACAAAG 616462
Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATA-AGAGA 177064
|| ||||| || ||||| | || || || || | || || | || |||| ||||
Sbjct 616461 TTCTCGTAGTTTTCTCTGGTCGTGCCAAGAACCACTGGCACTGTGCC---CATAGAGAGG 616405
Query 177065 TCG--GTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAG 177122
| |||||||||||| || || |||||| |||| || ||||||||||| | | |||
Sbjct 616404 GGGATGTAGAGTTTTTCAGTGATGTAGTCCTTGTGGACTGAGTTCTCAAAGGACAAATAA 616345
Query 177123 AATTTACA 177130
|| |||||
Sbjct 616344 AACTTACA 616337
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578301093608000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |