Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1594 102 5e-17 seq580 89.7 3e-13 >seq1594 Length=294527 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| ||| | || | ||| || ||| |||||||| || ||||| || || Sbjct 184260 CCACCCCTCAGACGGAGGACAAGATGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGAC 184319 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || ||||||||||| |||| | |||||| || | || Sbjct 184320 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 184379 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || || || ||||| | || || | || | ||||||||| | |||||| Sbjct 184380 ATGCCCTCCTTATCCTGGATTTT-GGCTTTGACGTTCTCAATGGTGTCGCTGGGTTCCAC 184438 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| ||||| || || | || || |||||||||||||| Sbjct 184439 CTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 184486 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | ||| | |||| || || ||| ||||| || |||||||| || || Sbjct 188224 CCACCCCTGAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGAC 188283 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || ||||||||||| |||| | |||||| || | || Sbjct 188284 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 188343 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || || || || || | | ||||| || | |||||| || | ||||| Sbjct 188344 ATGCCCTCCTTATCCTGGATCTT-GGCCTTAACATTCTCAATGGTGTCACTGGGCTCCAC 188402 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| ||||| || || | ||||| |||||||||||||| Sbjct 188403 CTCAAGGGTGATGGTTTTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 188450 >seq580 Length=311927 Score = 89.7 bits (98), Expect = 3e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 |||| || |||||||| || || ||||||||| |||| |||| |||||||| ||||| | Sbjct 162192 CTTTCTGGATGTTGTAGTCTGACAGTGTGCGTCCGTCTTCCAGCTGTTTTCCAGCAAAGA 162251 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCT 33648 ||| ||||||||||||| | || | |||| Sbjct 162252 TCAGACGCTGCTGATCTGGGGGAATACCT 162280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328631469921600