Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20mexicana_20[refseq_20GCF_5F001443325.1_202015-11-13] 18,105 sequences; 801,711,499 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1594 98.7 2e-15 >seq1594 Length=294527 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || ||||| ||||||| || |||| Sbjct 184027 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAAGTTGAGCCCAGTGAC 183968 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || || || || || || || || || ||| || Sbjct 183967 ACCATTGAGAATGTCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAGCAG 183908 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| ||||| |||||| |||| ||||| | ||| || ||||||||||| || Sbjct 183907 AGGCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGATTACAACATC 183848 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 |||||||| ||||| || ||||||||| Sbjct 183847 CAGAAAGAATCTACCCTCCACCTTGTT 183821 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| ||||| || ||||| ||||| | || ||||| |||| Sbjct 188447 CAGATCTTTGTGAAAACCCTCACCGGCAAAACCATCACCCTTGAGGTGGAGCCCAGTGAC 188388 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || || || || ||| || Sbjct 188387 ACCATTGAGAATGTTAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAGCAG 188328 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| |||||||||||| |||||||||| | || || | || |||||| || Sbjct 188327 AGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACATC 188268 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||||| || || || ||||| || Sbjct 188267 CAGAAAGAATCCACACTCCACCTGGT 188242 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| || ||||| ||||| |||| |||||| ||| Sbjct 184483 CAGATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAACCCAGCGAC 184424 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||||| ||| || || || || || || || || ||| || Sbjct 184423 ACCATTGAGAACGTCAAAGCCAAA-ATCCAGGATAAGGAGGGCATCCCCCCTGACCAGCA 184365 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || || ||||| |||||||||||| |||||||||| | || || | || ||||| | Sbjct 184364 GAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAATAT 184305 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||| ||||| || || || || ||||| Sbjct 184304 CCAAAAAGAATCCACCCTCCATCTTGT 184278 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || ||||| ||||| |||| || || |||| Sbjct 188219 CAGATCTTCGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTTGAGCCCAGTGAC 188160 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || || || || || || || || || ||| || Sbjct 188159 ACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAGCAG 188100 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| |||||||||||| |||||||||| | || | | || |||||| || Sbjct 188099 AGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAACATC 188040 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| ||||| || || ||||||||| Sbjct 188039 CAGAAGGAGTCCACCCTCCACCTTGTT 188013 Score = 84.2 bits (92), Expect = 5e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||||||||| || || ||||| ||||||| || ||||||| | || | |||||||| Sbjct 188013 AACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTC 188072 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCC 204848 ||||||||||||||| ||||| |||| Sbjct 188073 CAGCTGCTTTCCGGCAAAGATCAGCC 188098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181546652659705